Browse Element(s) Details


OsAffx.11121.1.S1_at

Description gb:NM_189279.1
DB_XREF= gi:34905641
GEN=P0475H04.4
TID=OsAffx.11121.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0475H04.4 (P0475H04.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g197906/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19740Os.7872.1.S1_at11/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19740Os.10732.1.S1_s_at1/111+11199375..11200109chloroplast protein 12, putative, expressed
LOC_Os01g19750Os.36822.1.S1_at11/111+11205351..11206589Acidic endochitinase precursor, putative, expressed
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11121.1.S1_at--587--5631Chr01:11224503..11224527 (25 bp)
GACACGTTGTTTCGTGCATAGCCAT
LOC_Os01g19790
OsAffx.11121.1.S1_at--773--9031Chr01:11224517..11224541 (25 bp)
TGCATAGCCATAGTGACCGGTCACG
LOC_Os01g19790
OsAffx.11121.1.S1_at--936--4431Chr01:11224565..11224589 (25 bp)
GCCATTCTAATGTTCTTCGGTCGAT
LOC_Os01g19790
OsAffx.11121.1.S1_at--450--9431Chr01:11224581..11224605 (25 bp)
TCGGTCGATCGGGACATTGTTTCCT
LOC_Os01g19790
OsAffx.11121.1.S1_at--450--31Chr01:11224596..11224620 (25 bp)
ATTGTTTCCTCCACGACCATGGTGA
LOC_Os01g19790
OsAffx.11121.1.S1_at--440--5951Chr01:11224646..11224670 (25 bp)
GAGCACATGCTATTGTTCTTCACCA
LOC_Os01g19790
OsAffx.11121.1.S1_at--840--571Chr01:11224803..11224827 (25 bp)
ATGCCCCTTTGGCTAACAACGTGTA
NONE
OsAffx.11121.1.S1_at--154--9811Chr01:11224816..11224840 (25 bp)
TAACAACGTGTACAGGAACCGCCTC
NONE
OsAffx.11121.1.S1_at--175--7171Chr01:11224842..11224866 (25 bp)
GTCCCAACCGTTGTTGTGCGGAAGG
NONE
OsAffx.11121.1.S1_at--95--10511NONE
TTCAAGCATGGATGTCGTCGCTCGC
NONE
OsAffx.11121.1.S1_at--240--991Chr01:11227088..11227112 (25 bp)
AGGAGTAATTGCATCGCCTCGTTTC
NONE
Target Sequence 
GACACGTTGTTTCGTGCATAGCCATAGTGACCGGTCACGCGAGGCCCGAGTTCTTGGATGAGGCCATTCTAATGTTCTTC
GGTCGATCGGGACATTGTTTCCTCCACGACCATGGTGACGGCAATGCGAGGCAGTTCATGGATGAGCACATGCTATTGTT
CTTCACCACAGTGGATGACCGCAGANNNNCNANCNNNNTNNNCNNNNNGNNTNNNNNNTNNCTACATGCCCCTTTGGCTA
ACAACGTGTACAGGAACCGCCTCCGTCCCAACCGTTGTTGTGCGGAAGGGAGGTTTGCTGCGATCGGGGAGAGAGAGGAA
GAGATCGGCGACGGGGCGATGATGAATTGGCGAGGAGGAATTGGCAGCGGCCGAGGAGGAGAAAGAAGGAGATTTCAAGC
ATGGATGTCGTCGCTCGCCCACGGGGTCGCGTTTGGACGCGATTGCCCCTGCGCTCGCTGTCAGTTCCGCTCGCAATCAC
GTGTGCGTAGGAGTAATTGCATCGCCTCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis