Browse Element(s) Details


Os.26698.4.S1_s_at

Description gb:NM_189284.1
DB_XREF= gi:34905651
GEN=P0475H04.9
TID=Os.26698.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.9 (P0475H04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0475H04.9 (P0475H04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1982011/11universal stress protein family protein, expressed
LOC_Os05g1271011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19760Os.33857.1.S1_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.2.S1_x_at10/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_x_at8/111+11208631..11218178expressed protein
LOC_Os01g19760Os.33857.3.S1_at5/111+11208631..11218178expressed protein
LOC_Os01g19770OsAffx.21963.1.S1_s_at11/111+11218630..11220431stress-inducible membrane pore protein, putative, expressed
LOC_Os01g19780NANA1+11220908..11221678hypothetical protein
LOC_Os01g19790OsAffx.11121.1.S1_at6/111+11224379..11224723hypothetical protein
LOC_Os01g19800Os.33687.1.S1_at11/111+11228750..11231589Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26698.4.S1_s_at--178--9113Chr01:11242303..11242327 (25 bp)
TGCTGCGGCTGAGGCTCCCGGGCGA
LOC_Os01g19820
Os.26698.4.S1_s_at--1084--6173Chr01:11242355..11242379 (25 bp)
GAGGAGAGCACGCACGCGCTCACCT
LOC_Os01g19820
Os.26698.4.S1_s_at--1028--5633Chr01:11242469..11242596 (25 bp)
GACAGCTCAGGGTACATGATGACCT
LOC_Os01g19820
Os.26698.4.S1_s_at--293--4813Chr01:11242579..11242600 (22 bp)
GCTCAGGGTACATGATGACCTCGGA
LOC_Os01g19820
Os.26698.4.S1_s_at--589--3473Chr01:11242579..11242603 (25 bp)
CAGGGTACATGATGACCTCGGACGT
LOC_Os01g19820
Os.26698.4.S1_s_at--1149--7013Chr01:11242583..11242607 (25 bp)
GTACATGATGACCTCGGACGTGATG
LOC_Os01g19820
Os.26698.4.S1_s_at--377--2113Chr01:11242585..11242609 (25 bp)
ACATGATGACCTCGGACGTGATGGC
LOC_Os01g19820
Os.26698.4.S1_s_at--664--713Chr01:11242587..11242611 (25 bp)
ATGATGACCTCGGACGTGATGGCGA
LOC_Os01g19820
Os.26698.4.S1_s_at--816--8913Chr01:11242591..11242615 (25 bp)
TGACCTCGGACGTGATGGCGAGCAT
LOC_Os01g19820
Os.26698.4.S1_s_at--525--1913Chr01:11242600..11242624 (25 bp)
ACGTGATGGCGAGCATGGACAAGTA
LOC_Os01g19820
Os.26698.4.S1_s_at--683--4613Chr01:11242608..11242632 (25 bp)
GCGAGCATGGACAAGTACGCCGCCG
LOC_Os01g19820
Target Sequence 
TGCTGCGGCTGAGGCTCCCGGGCGACGCATCGTGGTGGCCGTGGACGAGAGCGAGGAGAGCACGCACGCGCTCACCTGGT
GCCTCGCCAACGTCGTCTCCTCCTCCGGCGGCGACACGCTCGTGCTGCTCCACGCCCGCCGCCCCCGCCCCGTCTACGCC
GCCATGGACAGCTCAGGGTACATGATGACCTCGGACGTGATGGCGAGCATGGACAAGTACGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26698.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis