Browse Element(s) Details


OsAffx.21945.3.S1_s_at

Description tigr:9629.m01941
TID=OsAffx.21945.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1986011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19820Os.26698.4.S1_x_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.1.S1_a_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19820Os.26698.4.S1_s_at11/111+11242031..11243517universal stress protein family protein, expressed
LOC_Os01g19830NANA1+11243704..11243999hypothetical protein
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21945.3.S1_s_at--1004--4011Chr01:11262837..11262861 (25 bp)
CGTCGTCCAGATGGCGCCCATGGAG
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--761--3491Chr01:11262819..11262843 (25 bp)
CATGGAGTTCGGATCTTCCGCCGAT
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--912--6991Chr01:11261107..11261131 (25 bp)
GTACATCAAGCCTGGAACTAACCTA
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--980--8511Chr01:11261095..11261119 (25 bp)
TGGAACTAACCTACGCACTGATGCA
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--435--1751Chr01:11261087..11261111 (25 bp)
ACCTACGCACTGATGCAAGAATGCA
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--857--3571Chr01:11261064..11261088 (25 bp)
CATATGGCTTCTTCTAATGGGCGTA
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--827--8651Chr01:11261047..11261071 (25 bp)
TGGGCGTAGCTCTAATGGATCTCAA
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--785--4811Chr01:11261039..11261063 (25 bp)
GCTCTAATGGATCTCAAGGCGATTC
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--195--911Chr01:11261023..11261047 (25 bp)
AGGCGATTCAAAACTTGAGCTGTTT
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--759--8911Chr01:11261008..11261032 (25 bp)
TGAGCTGTTTGGTTTTGACTCTCTG
LOC_Os01g19860
OsAffx.21945.3.S1_s_at--17--7891Chr01:11260998..11261022 (25 bp)
GGTTTTGACTCTCTGGTCAATATTT
LOC_Os01g19860
Target Sequence 
CGTCGTCCAGATGGCGCCCATGGAGTTCGGATCTTCCGCCGATGCCTCCGCCTCCGCAGGGCCCAGTGGTGTGAACCGTG
CAAAAACTGATTTATTCAATTATCTATATATTAGGTACATCAAGCCTGGAACTAACCTACGCACTGATGCAAGAATGCAT
ATGGCTTCTTCTAATGGGCGTAGCTCTAATGGATCTCAAGGCGATTCAAAACTTGAGCTGTTTGGTTTTGACTCTCTGGT
CAATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21945.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis