Browse Element(s) Details


Os.12462.1.S1_at

Description gb:AA753649
DB_XREF= gi:2800429
DB_XREF=97BS0131
CLONE=97BS0131
TID=Os.12462.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12462 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g198702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19840Os.1082.1.S1_a_at10/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19840Os.1082.1.S1_x_at2/111+11246723..1124782060S ribosomal protein L29, putative, expressed
LOC_Os01g19850OsAffx.21945.2.S1_x_at11/111+11250922..11258462cation-chloride co-transporter, putative, expressed
LOC_Os01g19860OsAffx.21945.3.S1_s_at11/111+11260948..11262914hypothetical protein
LOC_Os01g19860OsAffx.21945.3.S1_at10/111+11260948..11262914hypothetical protein
LOC_Os01g19870Os.48010.1.S1_at11/111+11269722..11274395expressed protein
LOC_Os01g19870Os.12462.1.S1_at2/111+11269722..11274395expressed protein
LOC_Os01g19880Os.43043.1.S1_at11/111+11280158..11280795expressed protein
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12462.1.S1_at--581--1871Chr01:11274344..11274368 (25 bp)
ACGAGCTCATAGAAGTAAGGTCACT
LOC_Os01g19870
Os.12462.1.S1_at--189--7831Chr01:11274362..11274386 (25 bp)
GGTCACTGGTGGGAAGGAATTCATC
LOC_Os01g19870
Os.12462.1.S1_at--836--8211Chr01:11274377..11274401 (25 bp)
GGAATTCATCCAACTGTAAATCTCG
NONE
Os.12462.1.S1_at--235--3531Chr01:11274383..11274407 (25 bp)
CATCCAACTGTAAATCTCGTGGCAA
NONE
Os.12462.1.S1_at--812--3051Chr01:11274395..11274419 (25 bp)
AATCTCGTGGCAAATTTTGCTCCAT
NONE
Os.12462.1.S1_at--264--9111Chr01:11274412..11274436 (25 bp)
TGCTCCATACGATTGCGGTCAAATT
NONE
Os.12462.1.S1_at--291--3571Chr01:11274417..11274441 (25 bp)
CATACGATTGCGGTCAAATTCCGGC
NONE
Os.12462.1.S1_at--270--4611Chr01:11274440..11274464 (25 bp)
GCGTTGGGTTCATTATTTAACCTCA
NONE
Os.12462.1.S1_at--1146--10191Chr01:11274453..11274477 (25 bp)
TATTTAACCTCAATTCATTCTCCCC
NONE
Os.12462.1.S1_at--420--4291Chr01:11274477..11274501 (25 bp)
CCTCTCCAAAGGCTCGAAAATTTTG
NONE
Os.12462.1.S1_at--965--2871Chr01:11274485..11274509 (25 bp)
AAGGCTCGAAAATTTTGTCAGGAAT
NONE
Target Sequence 
ACGAGCTCATAGAAGTAAGGTCACTGGTGGGAAGGAATTCATCCAACTGTAAATCTCGTGGCAAATTTTGCTCCATACGA
TTGCGGTCAAATTCCGGCGTTGGGTTCATTATTTAACCTCAATTCATTCTCCCCCTCTCCAAAGGCTCGAAAATTTTGTC
AGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis