Browse Element(s) Details


Os.38457.1.S1_s_at

Description gb:AU166580
DB_XREF= gi:12404979
DB_XREF=AU166580
CLONE=C30183
TID=Os.38457.1
CNT=8
FEA=EST
TIER=Stack
STK=8
UG=Os.38457 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5725011/11expressed protein
LOC_Os03g0727011/11expressed protein
LOC_Os01g198941/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed
LOC_Os01g57280Os.35231.1.S1_at11/111+33424930..33430752Rp1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38457.1.S1_s_at--1127--10473Chr11:26097879..26097903 (25 bp)
TTAAGGATGGCTCTTTTGCTTGGAT
NONE
Os.38457.1.S1_s_at--845--2913Chr11:26097881..26097905 (25 bp)
AAGGATGGCTCTTTTGCTTGGATAT
NONE
Os.38457.1.S1_s_at--1109--7994Chr11:26097883..26097907 (25 bp)
GGATGGCTCTTTTGCTTGGATATGT
NONE
Os.38457.1.S1_s_at--1125--854Chr11:26097885..26097909 (25 bp)
ATGGCTCTTTTGCTTGGATATGTAA
NONE
Os.38457.1.S1_s_at--1014--4814Chr11:26097888..26097912 (25 bp)
GCTCTTTTGCTTGGATATGTAATGG
NONE
Os.38457.1.S1_s_at--1144--7673Chr11:26097912..26097936 (25 bp)
GGGTTTATTCCCTAGATCTGTTCCT
NONE
Os.38457.1.S1_s_at--927--10353Chr11:26097915..26097939 (25 bp)
TTTATTCCCTAGATCTGTTCCTGCT
NONE
Os.38457.1.S1_s_at--616--93Chr11:26097918..26097942 (25 bp)
ATTCCCTAGATCTGTTCCTGCTTAA
NONE
Os.38457.1.S1_s_at--180--4193Chr11:26097921..26097945 (25 bp)
CCCTAGATCTGTTCCTGCTTAATAA
NONE
Os.38457.1.S1_s_at--622--10033Chr11:26097924..26097948 (25 bp)
TAGATCTGTTCCTGCTTAATAAAGT
NONE
Os.38457.1.S1_s_at--990--6676Chr12:27324082..27324101 (20 bp)
GTTCCTGCTTAATAAAGTTGATGTG
NONE
Target Sequence 
TTAAGGATGGCTCTTTTGCTTGGATATGTAATGGGGTTTATTCCCTAGATCTGTTCCTGCTTAATAAAGTTGATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38457.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis