Browse Element(s) Details


Os.30597.3.S1_x_at

Description gb:NM_191485.1
DB_XREF= gi:34910053
GEN=B1100D10.2
TID=Os.30597.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.2 (B1100D10.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1100D10.2 (B1100D10.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g572409/11Protein ULTRAPETALA2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed
LOC_Os01g57280Os.35231.1.S1_at11/111+33424930..33430752Rp1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010022biological_processmeristem determinacy
GO:0010080biological_processregulation of floral meristem size
GO:0010081biological_processregulation of inflorescence meristem size
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30597.3.S1_x_at--215--7751Chr01:33404373..33404789 (25 bp)
GGTGTCGCGAAGGACCATTAGGTTC
LOC_Os01g57240
Os.30597.3.S1_x_at--1107--10651Chr01:33404351..33404375 (25 bp)
TTCCTCTTCTTCTGTGGTACCTAAT
LOC_Os01g57240
Os.30597.3.S1_x_at--3--7851NONE
GGTACCTAATGCACACAAGTTGACG
NONE
Os.30597.3.S1_x_at--642--6651Chr01:33403079..33403103 (25 bp)
GTTGACGCCTTCTGCCTTTGAGAAA
LOC_Os01g57240
Os.30597.3.S1_x_at--220--8971Chr01:33402963..33402987 (25 bp)
TGAAATACTACTCGCTGTCTCACAA
LOC_Os01g57240
Os.30597.3.S1_x_at--1012--7151Chr01:33402947..33402971 (25 bp)
GTCTCACAAATCTGCTAATGGTTCT
LOC_Os01g57240
Os.30597.3.S1_x_at--858--2271Chr01:33402919..33402943 (25 bp)
AAAGGCCGTAATGGTCGCCTGTCAC
LOC_Os01g57240
Os.30597.3.S1_x_at--764--4471Chr01:33402903..33402927 (25 bp)
GCCTGTCACACCGAGATGAGTTTAT
LOC_Os01g57240
Os.30597.3.S1_x_at--458--7291Chr01:33402824..33402848 (25 bp)
GTGCCGTATTTACCATGATGCTCTT
LOC_Os01g57240
Os.30597.3.S1_x_at--1130--6331Chr01:33402808..33402832 (25 bp)
GATGCTCTTGCTAAACCTAACTGGA
LOC_Os01g57240
Os.30597.3.S1_x_at--19--2571NONE
AACTGATAGGGTCACCTGCGGCGAT
NONE
Target Sequence 
GGTGTCGCGAAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGCACACAAGTTGACGCCTTCTGCCTTTGAGAAA
CACTCTGGAAGGGAGACTGCTGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAA
GACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGTTCTAACAAAGGCCGTAATGGTCGCCTGTCAC
ACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGGAGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATT
TACCATGATGCTCTTGCTAAACCTAACTGGACATGTGCTGATTTGACAACTGATAGGGTCACCTGCGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30597.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis