Browse Element(s) Details


Os.30597.1.S1_at

Description gb:AK064375.1
DB_XREF= gi:32974393
TID=Os.30597.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.2 (B1100D10.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D06, full insert sequence.
FL= gb:AK064375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5724011/11Protein ULTRAPETALA2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed
LOC_Os01g57280Os.35231.1.S1_at11/111+33424930..33430752Rp1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010022biological_processmeristem determinacy
GO:0010080biological_processregulation of floral meristem size
GO:0010081biological_processregulation of inflorescence meristem size
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30597.1.S1_at--549--9051Chr01:33400658..33400682 (25 bp)
TGCATGAAACACCACCATGGGACAT
LOC_Os01g57240
Os.30597.1.S1_at--463--7851Chr01:33400633..33400657 (25 bp)
GGTAGGATGAAACACCAGCATGGTC
LOC_Os01g57240
Os.30597.1.S1_at--678--2151Chr01:33400622..33400646 (25 bp)
ACACCAGCATGGTCGATATACCCTT
LOC_Os01g57240
Os.30597.1.S1_at--326--6511Chr01:33400608..33400632 (25 bp)
GATATACCCTTGCAGACCCAGATGT
LOC_Os01g57240
Os.30597.1.S1_at--535--5031Chr01:33400597..33400621 (25 bp)
GCAGACCCAGATGTTTTTTAGTCAA
LOC_Os01g57240
Os.30597.1.S1_at--96--3451Chr01:33400566..33400590 (25 bp)
CAGGTCCAATGATTCCCCGGCTTCA
LOC_Os01g57240
Os.30597.1.S1_at--967--7551Chr01:33400534..33400558 (25 bp)
GGGCCTCCTATTCTGAGAACTGAGA
LOC_Os01g57240
Os.30597.1.S1_at--1090--1431Chr01:33400519..33400543 (25 bp)
AGAACTGAGATGTTCTTTGACTAGC
LOC_Os01g57240
Os.30597.1.S1_at--396--4911Chr01:33400496..33400520 (25 bp)
GCTTCTTCCCATAGACAACAACTAG
LOC_Os01g57240
Os.30597.1.S1_at--249--8151Chr01:33400465..33400489 (25 bp)
GGAAAGCCGGCCGATTTTTGCTTCA
LOC_Os01g57240
Os.30597.1.S1_at--153--4491Chr01:33400460..33400484 (25 bp)
GCCGGCCGATTTTTGCTTCATATAA
LOC_Os01g57240
Target Sequence 
TGCATGAAACACCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAGATGTTTTTT
AGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTCCTATTCTGAGAACTGAGATGTTCTTTGAC
TAGCTTCTTCCCATAGACAACAACTAGTACCGGGGAAAGCCGGCCGATTTTTGCTTCATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis