Browse Element(s) Details


Os.35231.1.S1_at

Description gb:AK068412.1
DB_XREF= gi:32978430
TID=Os.35231.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative rust resistance protein (B1100D10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154B18, full insert sequence.
FL= gb:AK068412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5728011/11Rp1, putative, expressed
LOC_Os01g5731010/11Rp1, putative
LOC_Os01g573402/11Rp1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed
LOC_Os01g57280Os.35231.1.S1_at11/111+33424930..33430752Rp1, putative, expressed
LOC_Os01g57294OsAffx.11634.2.S1_x_at11/111+33442053..33442835hypothetical protein
LOC_Os01g57294OsAffx.11634.1.S1_x_at8/111+33442053..33442835hypothetical protein
LOC_Os01g57310Os.35231.1.S1_at10/111+33447347..33451219Rp1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35231.1.S1_at--534--4893Chr01:33471430..33471454 (25 bp)
GCTTACTACCGAGAGCATCTCACAG
LOC_Os01g57340
Os.35231.1.S1_at--706--452Chr01:33450818..33450842 (25 bp)
ATCTCACAGTTTCGCGTCCAGCGTT
LOC_Os01g57310
Os.35231.1.S1_at--900--9212Chr01:33450834..33450858 (25 bp)
TCCAGCGTTCGCTCTATATTAGCAG
LOC_Os01g57310
Os.35231.1.S1_at--591--152Chr01:33450851..33450875 (25 bp)
ATTAGCAGTTCTGTTATGCTCAACC
LOC_Os01g57310
Os.35231.1.S1_at--712--3772Chr01:33450881..33450905 (25 bp)
CTCTCTGCTGAAGGTTTCGTTGTTC
LOC_Os01g57310
Os.35231.1.S1_at--163--8812Chr01:33450901..33450925 (25 bp)
TGTTCCAGAGTTTCTCTCTCTTGAA
LOC_Os01g57310
Os.35231.1.S1_at--922--1472Chr01:33450955..33450979 (25 bp)
AGAATCTGCAAACTTCACATCCGTC
LOC_Os01g57310
Os.35231.1.S1_at--379--3313Chr01:33471598..33471622 (25 bp)
CACATCCGTCAAGTGCCTGAGGTTA
LOC_Os01g57340
Os.35231.1.S1_at--1108--692Chr01:33451007..33451031 (25 bp)
ATGAGGTCACCACCAGGAAATATGA
LOC_Os01g57310
Os.35231.1.S1_at--734--412Chr01:33451081..33451105 (25 bp)
ATCATCTATACCAGATCTGCCGTCC
LOC_Os01g57310
Os.35231.1.S1_at--785--10412Chr01:33451308..33451332 (25 bp)
TTATTTCGTTAACCCATGATCATGC
NONE
Target Sequence 
GCTTACTACCGAGAGCATCTCACAGTTTCGCGTCCAGCGTTCGCTCTATATTAGCAGTTCTGTTATGCTCAACCACATGC
TCTCTGCTGAAGGTTTCGTTGTTCCAGAGTTTCTCTCTCTTGAAAGCTGCAAGGAGCCATCCGTTTCATTCGAAGAATCT
GCAAACTTCACATCCGTCAAGTGCCTGAGGTTATGTAATTGTGAAATGAGGTCACCACCAGGAAATATGAAGTGCCTATC
CAGTCTAACGAAACTCGATATCTATGATTGCCCCAACATATCATCTATACCAGATCTGCCGTCCTCCCTCCAGCATATAT
GTATATGGGGTTGTGAGCTCTTGAAGGAGAGCTGCAGAGCACCTGAAGGAGAAAGCTGGCCAAAGATTGCGCATATCCGC
TGGAAGGAATTCAGATGAATTGTGCTTCAGAATCACAACTAGAGAGAAACGGAAAGGTGAAGGTTACATCAATGCATTGT
CAGAAGTATTTTCTTTTCTGTATTATTTATTTCGTTAACCCATGATCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis