Browse Element(s) Details


Os.9727.1.S1_at

Description gb:AK067847.1
DB_XREF= gi:32977865
TID=Os.9727.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aldehyde 5-hydroxylase (OSJNBa0055O03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124D03, full insert sequence.
FL= gb:AK067847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3684811/11Cytochrome P450 84A1, putative, expressed
LOC_Os01g572201/11SCAMP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed
LOC_Os10g36830OsAffx.30694.1.S1_at11/1110+19386195..19390452hypothetical protein
LOC_Os10g36839NANA10+19393048..19393293NA
LOC_Os10g36848Os.9727.1.S1_at11/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36848OsAffx.28081.1.S1_x_at1/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36860Os.14817.1.S1_a_at11/1110+19417567..19419962CRS1/YhbY domain containing protein, expressed
LOC_Os10g36870Os.3011.1.S1_at11/1110+19421965..19425476SH3 domain-containing protein 3, putative, expressed
LOC_Os10g36880Os.38394.1.S1_at11/1110+19427099..19438211Kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0004497molecular_functionmonooxygenase activity
GO:0005386molecular_functioncarrier activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9727.1.S1_at--804--3251Chr10:19399079..19399103 (25 bp)
CAACTGGTCGCTCCCCGACGGGATG
LOC_Os10g36848
Os.9727.1.S1_at--481--671Chr10:19399057..19399081 (25 bp)
ATGAAGCCGTCCGAGCTCGACATGT
LOC_Os10g36848
Os.9727.1.S1_at--1076--5651Chr10:19399039..19399063 (25 bp)
GACATGTCCGACATCTTCGGCCTCA
LOC_Os10g36848
Os.9727.1.S1_at--813--8671Chr10:19398964..19398988 (25 bp)
TGCCCCTTGTACTGACGGCGGCCGG
LOC_Os10g36848
Os.9727.1.S1_at--446--2972Chr01:33390001..33390365 (25 bp)
AATGGTTTGCAGGTGATGGTGTTAA
LOC_Os01g57220
Os.9727.1.S1_at--724--10491Chr10:19398895..19398919 (25 bp)
TTAAAAGTTCAGACGCGTGTGGCGC
LOC_Os10g36848
Os.9727.1.S1_at--790--10531Chr10:19398888..19398912 (25 bp)
TTCAGACGCGTGTGGCGCCATTGGA
LOC_Os10g36848
Os.9727.1.S1_at--946--7071Chr10:19398784..19398808 (25 bp)
GTAATTTAATCCATGTCTCCAGAAC
LOC_Os10g36848
Os.9727.1.S1_at--762--9831Chr10:19398692..19398716 (25 bp)
TAAATTTGGTGTCCGGTGTGCCTGT
LOC_Os10g36848
Os.9727.1.S1_at--439--8711Chr10:19398683..19398707 (25 bp)
TGTCCGGTGTGCCTGTCCACATAAG
LOC_Os10g36848
Os.9727.1.S1_at--1016--7251Chr10:19398669..19398693 (25 bp)
GTCCACATAAGCACAGCCTCTGAAT
LOC_Os10g36848
Target Sequence 
CAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGACATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCA
CCCGCCTNTCCGCCGTCGCCACGCCCCGGCTCACCTGCCCCTTGTACTGACGGCGGCCGGCGACCGCGGCGGCGTACGGC
AAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGC
TTCCTCTGGGCCTTTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAA
CAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGT
CCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis