Browse Element(s) Details


Os.3011.1.S1_at

Description gb:AK067223.1
DB_XREF= gi:32977241
TID=Os.3011.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026L12.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097A14, full insert sequence.
FL= gb:AK067223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3687011/11SH3 domain-containing protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36848Os.9727.1.S1_at11/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36848OsAffx.28081.1.S1_x_at1/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36860Os.14817.1.S1_a_at11/1110+19417567..19419962CRS1/YhbY domain containing protein, expressed
LOC_Os10g36870Os.3011.1.S1_at11/1110+19421965..19425476SH3 domain-containing protein 3, putative, expressed
LOC_Os10g36880Os.38394.1.S1_at11/1110+19427099..19438211Kinesin heavy chain, putative, expressed
LOC_Os10g36900NANA10+19445840..19446777hypothetical protein
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0012505cellular_componentendomembrane system
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3011.1.S1_at--1006--4731Chr10:19422711..19422735 (25 bp)
GCTGTTGAGAGTTCTATGCCACCAC
LOC_Os10g36870
Os.3011.1.S1_at--32--2571Chr10:19422622..19422646 (25 bp)
AACTGTGGAATTCTTCTTGGCTGAG
LOC_Os10g36870
Os.3011.1.S1_at--98--891Chr10:19422478..19422502 (25 bp)
AGGCCATCCAGTCTTATCGTGCTGA
LOC_Os10g36870
Os.3011.1.S1_at--362--6111Chr10:19422453..19422477 (25 bp)
GAGTGAAACTGAGCTCAACCTGGCA
LOC_Os10g36870
Os.3011.1.S1_at--268--4271Chr10:19422435..19422459 (25 bp)
CCTGGCAGCTGGTGACTATATAGTT
LOC_Os10g36870
Os.3011.1.S1_at--340--10731Chr10:19422200..19422224 (25 bp)
TTGCAAGTAAAGTCGCCCAGGTCTT
LOC_Os10g36870
Os.3011.1.S1_at--255--4351Chr10:19422184..19422208 (25 bp)
CCAGGTCTTCTAGGCGTTCAATGAG
LOC_Os10g36870
Os.3011.1.S1_at--185--9891Chr10:19422152..19422176 (25 bp)
TACATAACCCTGGTGTTGTACACTG
LOC_Os10g36870
Os.3011.1.S1_at--653--6711Chr10:19422117..19422141 (25 bp)
GTTCGTGATCTTCAAAGACCCTCTG
LOC_Os10g36870
Os.3011.1.S1_at--849--11Chr10:19422058..19422082 (25 bp)
ATTGTCATTATCACTACCCCTTTTG
LOC_Os10g36870
Os.3011.1.S1_at--1154--3611Chr10:19422003..19422027 (25 bp)
CTTGTTGCATGGCTAGCTTTCTGAA
LOC_Os10g36870
Target Sequence 
GCTGTTGAGAGTTCTATGCCACCACCACCTTCATATGAAGAAATTAACGGTGTTTTCATGAGGAATCCAACAGTCGCNTG
AATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGGCCATCCAGTCTTATCGTGCTGAGAGTGAAACTGAGCTCAACCTG
GCAGCTGGTGACTATATAGTTGTCCGGAAGGTGTCAAACAATGGATGGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTG
GTTCCCTTACGACTACATCGAGAAAAGGGACCGTGTGCTTGCAAGTAAAGTCGCCCAGGTCTTCTAGGCGTTCAATGAGC
CATACATACATAACCCTGGTGTTGTACACTGTATTATGATCGTTCGTGATCTTCAAAGACCCTCTGATCAGAGAAATCAC
AAATATTCTTTTGTTCTATTATTGTCATTATCACTACCCCTTTTGTCAAAACCAGTGCAGCCTTTTGTATGACATCTTGT
TGCATGGCTAGCTTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis