Browse Element(s) Details


Os.38394.1.S1_at

Description gb:BP184837
DB_XREF= gi:32948265
DB_XREF=BP184837
TID=Os.38394.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) kinesin-like protein (OSJNBa0026L12.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3688011/11Kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36848Os.9727.1.S1_at11/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36848OsAffx.28081.1.S1_x_at1/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36860Os.14817.1.S1_a_at11/1110+19417567..19419962CRS1/YhbY domain containing protein, expressed
LOC_Os10g36870Os.3011.1.S1_at11/1110+19421965..19425476SH3 domain-containing protein 3, putative, expressed
LOC_Os10g36880Os.38394.1.S1_at11/1110+19427099..19438211Kinesin heavy chain, putative, expressed
LOC_Os10g36900NANA10+19445840..19446777hypothetical protein
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38394.1.S1_at--358--5551Chr10:19427949..19427973 (25 bp)
GAAACTGATTCCTTGGGTGACAAAG
LOC_Os10g36880
Os.38394.1.S1_at--259--8151Chr10:19427922..19427946 (25 bp)
GGAAATTCCCATGTCTGCAAAGTAT
LOC_Os10g36880
Os.38394.1.S1_at--796--5031Chr10:19427877..19427901 (25 bp)
GCAGTTTTGCTTCCTTGTCGGCATT
LOC_Os10g36880
Os.38394.1.S1_at--1122--10711Chr10:19427588..19427612 (25 bp)
TTGCTCGCTTGCCTGTTCAGAATGC
LOC_Os10g36880
Os.38394.1.S1_at--968--3011Chr10:19427568..19427592 (25 bp)
AATGCCCTCTATGCCGTACAAGAAT
LOC_Os10g36880
Os.38394.1.S1_at--815--7931Chr10:19427535..19427559 (25 bp)
GGATAATTACCTTCACCTAAAGTGC
LOC_Os10g36880
Os.38394.1.S1_at--728--8991Chr10:19427394..19427418 (25 bp)
TGAAGCACCCAATCTCTTCTTGTAA
LOC_Os10g36880
Os.38394.1.S1_at--45--10291Chr10:19427344..19427368 (25 bp)
TTTCCCCTAGCAAAGAAGGTGCCTT
LOC_Os10g36880
Os.38394.1.S1_at--449--8811Chr10:19427315..19427339 (25 bp)
TGTTCCTTCTGTGTTTGTATCCCAA
LOC_Os10g36880
Os.38394.1.S1_at--1056--10711Chr10:19427273..19427297 (25 bp)
TTGCTCTATAGCTTTCCCAGTTCAA
LOC_Os10g36880
Os.38394.1.S1_at--361--9712Chr10:19427252..19427276 (25 bp)
TCAACCTGTTCTTTGTTGTACGAGA
LOC_Os10g36880
Target Sequence 
GAAACTGATTCCTTGGGTGACAAAGATGGAAATTCCCATGTCTGCAAAGTATGTTTTGAATCTGCCACTGCTGCAGTTTT
GCTTCCTTGTCGGCATTTTTGCTTGTGCAAGCCTTGCTCGCTTGCCTGTTCAGAATGCCCTCTATGCCGTACAAGAATCG
CAGACAGGATAATTACCTTCACCTAAAGTGCATGTTATCTTAAAAGGTAACTTGAAGCACCCAATCTCTTCTTGTAAAAT
CATCAGTGGTATATGATTCTTTTTTCCCCTAGCAAAGAAGGTGCCTTTTTATGTTCCTTCTGTGTTTGTATCCCAATTCT
TTTTTTTTTTTGGTTTGCTCTATAGCTTTCCCAGTTCAACCTGTTCTTTGTTGTACGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis