Browse Element(s) Details


OsAffx.27508.100.S1_s_at

Description gb:AK108972.1
DB_XREF= gi:32994181
TID=OsAffx.27508.100
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-E02, full insert sequence.
FL= gb:AK108972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3692411/11aquaporin NIP5.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36870Os.3011.1.S1_at11/1110+19421965..19425476SH3 domain-containing protein 3, putative, expressed
LOC_Os10g36880Os.38394.1.S1_at11/1110+19427099..19438211Kinesin heavy chain, putative, expressed
LOC_Os10g36900NANA10+19445840..19446777hypothetical protein
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.100.S1_s_at--462--6631Chr10:19455174..19455198 (25 bp)
GTTGTGAGAGAGCTGGACACCATTT
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--319--8531Chr10:19455161..19455185 (25 bp)
TGGACACCATTTCTCTCATCAATAT
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--315--351Chr10:19455144..19455168 (25 bp)
ATCAATATCCCTTAGCCAAACCTTG
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--268--4391Chr10:19455130..19455154 (25 bp)
GCCAAACCTTGAGAAAAGCCTGTGA
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--870--2311Chr10:19455046..19455070 (25 bp)
AAAGGTCATCAGTTCCAAGTCCCAA
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--372--2851Chr10:19455030..19455054 (25 bp)
AAGTCCCAAAAGCATTGTTCTTTCA
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--793--6731Chr10:19455014..19455038 (25 bp)
GTTCTTTCATAACTAGGCATCTCGG
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--333--931Chr10:19455000..19455024 (25 bp)
AGGCATCTCGGTTAATTAGGGTGGA
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--578--10071Chr10:19454984..19455008 (25 bp)
TAGGGTGGATATTCCTCCACTAATC
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--551--9271Chr10:19454972..19454996 (25 bp)
TCCTCCACTAATCCCTTAGCGAAAA
LOC_Os10g36924
OsAffx.27508.100.S1_s_at--176--3331Chr10:19454935..19454959 (25 bp)
CACTAGATCATGTAATTTTCGGCGA
LOC_Os10g36924
Target Sequence 
GTTGTGAGAGAGCTGGACACCATTTCTCTCATCAATATCCCTTAGCCAAACCTTGAGAAAAGCCTGTGAAGCATGTAAGA
ACACACCAGTTTGTTCCATCCAAACCCAACCCAAAAAAGCACCAAAAAAAAGGTCATCAGTTCCAAGTCCCAAAAGCATT
GTTCTTTCATAACTAGGCATCTCGGTTAATTAGGGTGGATATTCCTCCACTAATCCCTTAGCGAAAAATCTACAAAAACC
ACTAGATCATGTAATTTTCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.100.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis