Browse Element(s) Details


Os.11620.1.S1_a_at

Description gb:AK063863.1
DB_XREF= gi:32973881
TID=Os.11620.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026L12.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E01, full insert sequence.
FL= gb:AK063863.1 gb:AK102890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3695011/11IMP dehydrogenase/GMP reductase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36900NANA10+19445840..19446777hypothetical protein
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein
LOC_Os10g36980Os.17865.1.S1_at11/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.2.S1_x_at3/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.4.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980Os.46643.1.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.3.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11620.1.S1_a_at--975--2651Chr10:19473504..19473528 (25 bp)
AAGCGCGTAGGCGACTTCTTTCAGA
LOC_Os10g36950
Os.11620.1.S1_a_at--177--5691Chr10:19473516..19473540 (25 bp)
GACTTCTTTCAGATCGTGCTTACGG
LOC_Os10g36950
Os.11620.1.S1_a_at--294--9651Chr10:19473524..19473548 (25 bp)
TCAGATCGTGCTTACGGGACGTGAT
LOC_Os10g36950
Os.11620.1.S1_a_at--897--9931Chr10:19473536..19473560 (25 bp)
TACGGGACGTGATGCATTGCTCTGC
LOC_Os10g36950
Os.11620.1.S1_a_at--610--71Chr10:19473551..19473575 (25 bp)
ATTGCTCTGCAACCTCAGGATCTCA
LOC_Os10g36950
Os.11620.1.S1_a_at--807--3431Chr10:19473574..19473598 (25 bp)
CAGATGCAGCAAGCAAGGTCGCCGA
LOC_Os10g36950
Os.11620.1.S1_a_at--533--1691Chr10:19473844..19473868 (25 bp)
AGCCTTGTCAAGTCCTATACAGTCA
LOC_Os10g36950
Os.11620.1.S1_a_at--147--1151Chr10:19473854..19473878 (25 bp)
AGTCCTATACAGTCATTTTGTTTAC
LOC_Os10g36950
Os.11620.1.S1_a_at--705--6071Chr10:19473889..19473913 (25 bp)
GAGTTAGTGCTCTACTCGTTGTAGC
LOC_Os10g36950
Os.11620.1.S1_a_at--437--3731Chr10:19473900..19473924 (25 bp)
CTACTCGTTGTAGCGCAGGTCATAT
LOC_Os10g36950
Os.11620.1.S1_a_at--839--3571Chr10:19473920..19473944 (25 bp)
CATATGCGAGTGTATAGAGGCGTGA
LOC_Os10g36950
Target Sequence 
AAGCGCGTAGGCGACTTCTTTCAGATCGTGCTTACGGGACGTGATGCATTGCTCTGCAACCTCAGGATCTCAGATGCAGC
AAGCAAGGTCGCCGAGGTCAGCTCTTGATATTTTATGTAAGGTTTCNTGNCGTNTAATGTTTNTGTGGCTAAGTGTGNGC
NCAGCTNGGNAGCACAGCTTTGNACATTGTGCTTCTGACCTGTGGCCCCTGCTCAGCCCCACNGAAANTAAGCTGGGGCC
ACATCTCAGAAGCATTGTGCATANTCCTGTGCTGCTAGTTGTGCTTGTGCCGTGCAAATCTTCTAAGTCCATCGGCATCA
GGCTCTGTGACTGTAAACTCAGCCTTGTCAAGTCCTATACAGTCATTTTGTTTACTTTTTGGTAAGAGTTAGTGCTCTAC
TCGTTGTAGCGCAGGTCATATGCGAGTGTATAGAGGCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11620.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis