Browse Element(s) Details


Os.46643.1.S1_x_at

Description gb:NM_197328.1
DB_XREF= gi:37536015
TID=Os.46643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46643 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBa0026L12.15), mRNA.
PROD=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3696011/11transposon protein, putative, unclassified, expressed
LOC_Os10g370503/11transposon protein, putative, unclassified, expressed
LOC_Os10g370342/11Cytochrome P450 family protein
LOC_Os10g371201/11transposon protein, putative, unclassified
LOC_Os10g370701/11Cytochrome P450 family protein
LOC_Os10g371601/11transposon protein, putative, unclassified, expressed
LOC_Os10g369801/11transposon protein, putative, unclassified, expressed
LOC_Os10g370201/11transposon protein, putative, unclassified
LOC_Os10g371101/11transposon protein, putative, unclassified, expressed
LOC_Os10g371001/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36924OsAffx.27508.100.S1_s_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.46645.1.S1_at11/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924OsAffx.20201.1.S1_x_at10/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36924Os.5393.1.S1_at3/1110+19448706..19455302aquaporin NIP5.1, putative, expressed
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein
LOC_Os10g36980Os.17865.1.S1_at11/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.2.S1_x_at3/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.4.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980Os.46643.1.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.3.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46643.1.S1_x_at--821--5897Chr10:19552777..19552801 (25 bp)
GAGCTGGTCAAGAACCCATCCATCC
LOC_Os10g37160
Os.46643.1.S1_x_at--903--572Chr10:19475870..19475894 (25 bp)
ATCCAATCAAAGCTCTACGAGGAGA
LOC_Os10g36960
Os.46643.1.S1_x_at--1007--6451Chr10:19475893..19475917 (25 bp)
GATCAAGGCCACGATGAGCGGCGAC
LOC_Os10g36960
Os.46643.1.S1_x_at--937--9711Chr10:19475931..19475955 (25 bp)
TCAACGAGGACGACGCCCGCAACAA
LOC_Os10g36960
Os.46643.1.S1_x_at--787--6131Chr10:19475984..19476008 (25 bp)
GAGGGTCTCAGGAAGCACCCGCCTA
LOC_Os10g36960
Os.46643.1.S1_x_at--34--5391Chr10:19475995..19476019 (25 bp)
GAAGCACCCGCCTATGCACTTGCTG
LOC_Os10g36960
Os.46643.1.S1_x_at--627--2875Chr10:19518693..19518717 (25 bp)
AAGGGCGCCACGGTGAACTTCATGG
LOC_Os10g37070
Os.46643.1.S1_x_at--740--1771Chr10:19476197..19476221 (25 bp)
ACCGGCAGCAGAGAGATCAGGATGA
LOC_Os10g36960
Os.46643.1.S1_x_at--863--1632Chr10:19476260..19476284 (25 bp)
AGCGTCGCCATGCTGCACCTGGAGT
LOC_Os10g36960
Os.46643.1.S1_x_at--449--10631Chr10:19476347..19476371 (25 bp)
TTCGCCGAGAGGCTCGAGTTCACCA
LOC_Os10g36960
Os.46643.1.S1_x_at--1049--7111Chr10:19476374..19476395 (22 bp)
GTCATGGCAAAGTCGCTCCGCGGGA
LOC_Os10g36960
Target Sequence 
GAGCTGGTCAAGAACCCATCCATCCAATCAAAGCTCTACGAGGAGATCAAGGCCACGATGAGCGGCGACAACGACGACGA
GATCAACGAGGACGACGCCCGCAACAACCTCCCATACCTGAAGGCCGTCATCCTCGAGGGTCTCAGGAAGCACCCGCCTA
TGCACTTGCTGCTCCCGCACAAGGCGGCCGAGGACGTCGAGGTCGGCGGGTACCTCATCCCCAAGGGCGCCACGGTGAAC
TTCATGGTGGCCGAGATAGGCAGGGACGAGAAGGAGTGGGAGAAGCCGACGGAGTTCATCCCGGAGCGGTTCATGGCCGG
CGGCGGCGACGGGGAGGGCGTCGACGTGACCGGCAGCAGAGAGATCAGGATGATGCCGTTCGGCGCCGGGAGGAGGATCT
GCGCCGCGCTCAGCGTCGCCATGCTGCACCTGGAGTACTTCGTGGCGAACATGGTGAAGGAGTTCGAGTGGAAGGAGGTC
GCCGGCGACGAGGTGGACTTCGCCGAGAGGCTCGAGTTCACCACCGTCATGGCAAAGTCGCTCCGCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46643.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis