Browse Element(s) Details

Os.46592.1.S1_at

Description

gb:AK060321.1
DB_XREF= gi:32970339
TID=Os.46592.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0026L12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F08, full insert sequence.
FL= gb:AK060321.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g37034	11/11	Cytochrome P450 family protein
LOC_Os03g37450	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g36960	Os.46643.1.S1_x_at	11/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	Os.46643.1.S1_at	11/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.2.S1_x_at	4/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.3.S1_x_at	2/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.1.S1_x_at	2/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36960	OsAffx.30695.4.S1_x_at	1/11	10	+	19474817..19476418	transposon protein, putative, unclassified, expressed
LOC_Os10g36966	OsAffx.7975.1.S1_at	11/11	10	+	19476908..19478454	hypothetical protein
LOC_Os10g36972	NA	NA	10	+	19479494..19479922	hypothetical protein
LOC_Os10g36980	Os.17865.1.S1_at	11/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	OsAffx.30695.2.S1_x_at	3/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	OsAffx.30695.4.S1_x_at	1/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	Os.46643.1.S1_x_at	1/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36980	OsAffx.30695.3.S1_x_at	1/11	10	+	19480575..19482362	transposon protein, putative, unclassified, expressed
LOC_Os10g36984	NA	NA	10	+	19482711..19484390	hypothetical protein
LOC_Os10g36990	Os.35344.3.S1_x_at	11/11	10	+	19485516..19491690	transposon protein, putative, Mutator sub-class
LOC_Os10g36990	Os.35344.18.S1_x_at	10/11	10	+	19485516..19491690	transposon protein, putative, Mutator sub-class
LOC_Os10g36990	OsAffx.22940.5.S1_x_at	2/11	10	+	19485516..19491690	transposon protein, putative, Mutator sub-class
LOC_Os10g37010	OsAffx.13460.1.S1_at	2/11	10	+	19493697..19495523	hypothetical protein
LOC_Os10g37020	OsAffx.30695.4.S1_at	10/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	OsAffx.30695.4.S1_x_at	8/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	OsAffx.30695.2.S1_x_at	3/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	OsAffx.30695.3.S1_x_at	1/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37020	Os.46643.1.S1_x_at	1/11	10	+	19497148..19498572	transposon protein, putative, unclassified
LOC_Os10g37034	Os.46592.1.S1_at	11/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	Os.46592.2.S1_x_at	9/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.2.S1_x_at	5/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.4.S1_x_at	5/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.4.S1_at	4/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.3.S1_x_at	2/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	Os.46643.1.S1_x_at	2/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	OsAffx.30695.1.S1_x_at	1/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37034	Os.51397.1.S1_at	1/11	10	+	19499596..19503060	Cytochrome P450 family protein
LOC_Os10g37050	OsAffx.30695.2.S1_x_at	11/11	10	+	19508153..19509737	transposon protein, putative, unclassified, expressed
LOC_Os10g37050	OsAffx.30695.2.S1_at	11/11	10	+	19508153..19509737	transposon protein, putative, unclassified, expressed
LOC_Os10g37050	Os.46643.1.S1_x_at	3/11	10	+	19508153..19509737	transposon protein, putative, unclassified, expressed
LOC_Os10g37050	OsAffx.30695.4.S1_x_at	2/11	10	+	19508153..19509737	transposon protein, putative, unclassified, expressed
LOC_Os10g37050	OsAffx.30695.3.S1_x_at	2/11	10	+	19508153..19509737	transposon protein, putative, unclassified, expressed
LOC_Os10g37050	OsAffx.30695.1.S1_x_at	1/11	10	+	19508153..19509737	transposon protein, putative, unclassified, expressed
LOC_Os10g37060	Os.46503.1.S1_at	11/11	10	+	19510933..19512780	T-complex protein 1, delta subunit, putative, expressed
LOC_Os10g37070	OsAffx.30695.1.S1_x_at	11/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37070	OsAffx.30695.1.S1_at	11/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37070	OsAffx.30695.3.S1_x_at	6/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37070	OsAffx.30695.4.S1_x_at	1/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37070	OsAffx.30695.2.S1_x_at	1/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37070	OsAffx.30725.2.S1_x_at	1/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37070	Os.46643.1.S1_x_at	1/11	10	+	19517847..19519115	Cytochrome P450 family protein
LOC_Os10g37079	NA	NA	10	+	19522165..19522383	hypothetical protein
LOC_Os10g37090	Os.18362.1.S1_at	8/11	10	+	19524163..19526198	expressed protein
LOC_Os10g37100	OsAffx.30695.3.S1_x_at	11/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	OsAffx.30695.1.S1_x_at	4/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	OsAffx.30695.2.S1_x_at	2/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	OsAffx.30695.4.S1_x_at	2/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	Os.46643.1.S1_x_at	1/11	10	+	19526960..19528498	Cytochrome P450 family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0019825	molecular_function	oxygen binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46592.1.S1_at--1136--121	1	Chr10:19499822..19499846 (25 bp)	AGTTCAAGAACTAGTCGCTCACAAA	LOC_Os10g37034
Os.46592.1.S1_at--1161--1005	1	Chr10:19499833..19499857 (25 bp)	TAGTCGCTCACAAACACCTACAGAA	LOC_Os10g37034
Os.46592.1.S1_at--262--521	1	Chr10:19499909..19499933 (25 bp)	GAATTCAGAGAGCTTGTCCCGGACT	LOC_Os10g37034
Os.46592.1.S1_at--1066--999	1	Chr10:19499938..19499962 (25 bp)	TAGCGTCGCCAGCACACAGGTGTGT	LOC_Os10g37034
Os.46592.1.S1_at--1077--865	2	Chr10:19499958..19499982 (25 bp)	TGTGTGAAGATTATAGGTACCCCAT	LOC_Os10g37034
Os.46592.1.S1_at--12--701	5	Chr10:19500041..19500065 (25 bp)	GTACGGATCATGACTTGAGTATTAC	LOC_Os10g37034
Os.46592.1.S1_at--259--1001	1	Chr10:19500186..19500210 (25 bp)	TATAAGGCGGGTAGGAAGCCCTCTA	LOC_Os10g37034
Os.46592.1.S1_at--465--795	1	Chr10:19500211..19500235 (25 bp)	GGATAGAGGATTCACAACCTGATCG	LOC_Os10g37034
Os.46592.1.S1_at--494--349	1	Chr10:19500275..19500299 (25 bp)	CAGGCCAGTAGGGTATGAACTCTTA	LOC_Os10g37034
Os.46592.1.S1_at--851--363	1	Chr10:19500294..19500318 (25 bp)	CTCTTATCGAGAGGGTTTGAACCTA	LOC_Os10g37034
Os.46592.1.S1_at--1059--719	8	Chr10:19501164..19501188 (25 bp)	GTCGTGTGATTTTTTCTCTCAGATT	LOC_Os10g37034

Target Sequence

AGTTCAAGAACTAGTCGCTCACAAACACCTACAGAACCAAATCTAGTTATCGAACTATTGGTGCAAAAATGACTGACATG
ATCATTGGAATTCAGAGAGCTTGTCCCGGACTCTGCTAGCGTCGCCAGCACACAGGTGTGTGAAGATTATAGGTACCCCA
TACCCACACGACATGGTTATCCAACTAGTTATAGGGGATAACTTATATCTATGGAATATGTACGGATCATGACTTGAGTA
TTACGTTTCCTTGTATATTATAGAACGGCATAAAGTCTTAGTTTGATAATATTGTAAAGTAGATTTAGTAAACCGATACC
GTATTGATTAAGGTTTCTATCTTGTAATCTTGCCCCCCATCCTATATAAGGCGGGTAGGAAGCCCTCTAGGATAGAGGAT
TCACAACCTGATCGTCAGATTAATACTGCACCTGACGGATTCAAGCCCCCAAACAGGCCAGTAGGGTATGAACTCTTATC
GAGAGGGTTTGAACCTATCTAAAATTCGATTTTGCTATAGATTTGTCGTGTGATTTTTTCTCTCAGATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis