Browse Element(s) Details


OsAffx.30695.2.S1_at

Description tigr:9638.m03307
TID=OsAffx.30695.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3705011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37050OsAffx.30695.2.S1_x_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.2.S1_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050Os.46643.1.S1_x_at3/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.4.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.3.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.1.S1_x_at1/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37060Os.46503.1.S1_at11/1110+19510933..19512780T-complex protein 1, delta subunit, putative, expressed
LOC_Os10g37070OsAffx.30695.1.S1_x_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.1.S1_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.3.S1_x_at6/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.4.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30725.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070Os.46643.1.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37079NANA10+19522165..19522383hypothetical protein
LOC_Os10g37090Os.18362.1.S1_at8/1110+19524163..19526198expressed protein
LOC_Os10g37100OsAffx.30695.3.S1_x_at11/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.1.S1_x_at4/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.2.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100OsAffx.30695.4.S1_x_at2/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37100Os.46643.1.S1_x_at1/1110+19526960..19528498Cytochrome P450 family protein
LOC_Os10g37110Os.22726.1.A1_at9/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110Os.46643.1.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.2.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.4.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37120Os.46643.1.S1_x_at1/1110+19534604..19536163transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30695.2.S1_at--802--3331Chr10:19509137..19509161 (25 bp)
CACGATGTCAACCACGCTGCAATGG
LOC_Os10g37050
OsAffx.30695.2.S1_at--969--1871Chr10:19509138..19509162 (25 bp)
ACGATGTCAACCACGCTGCAATGGA
LOC_Os10g37050
OsAffx.30695.2.S1_at--549--4051Chr10:19509139..19509163 (25 bp)
CGATGTCAACCACGCTGCAATGGAT
LOC_Os10g37050
OsAffx.30695.2.S1_at--658--6271Chr10:19509140..19509164 (25 bp)
GATGTCAACCACGCTGCAATGGATC
LOC_Os10g37050
OsAffx.30695.2.S1_at--1016--751Chr10:19509141..19509165 (25 bp)
ATGTCAACCACGCTGCAATGGATCA
LOC_Os10g37050
OsAffx.30695.2.S1_at--602--7631Chr10:19509619..19509643 (25 bp)
GGGAGTTCGAGTGGAGGGAGATCGC
LOC_Os10g37050
OsAffx.30695.2.S1_at--682--5351Chr10:19509648..19509672 (25 bp)
GAAGAGGTGGACTTTGCCGAGAAGT
LOC_Os10g37050
OsAffx.30695.2.S1_at--97--2791Chr10:19509649..19509673 (25 bp)
AAGAGGTGGACTTTGCCGAGAAGTT
LOC_Os10g37050
OsAffx.30695.2.S1_at--215--8531Chr10:19509655..19509679 (25 bp)
TGGACTTTGCCGAGAAGTTGGAGTT
LOC_Os10g37050
OsAffx.30695.2.S1_at--1001--8111Chr10:19509656..19509680 (25 bp)
GGACTTTGCCGAGAAGTTGGAGTTC
LOC_Os10g37050
OsAffx.30695.2.S1_at--259--5691Chr10:19509657..19509681 (25 bp)
GACTTTGCCGAGAAGTTGGAGTTCA
LOC_Os10g37050
Target Sequence 
CACGATGTCAACCACGCTGCAATGGATCATGGCCGAGCTGGTCAAGAACCCATCCATCCAATCCAAGCTCCACGACGAGA
TCAAGTCCAAGACCAGCGACGACCACGACGAGATCACCGAGGAGGACACCCAGAAGATGCCATACCTGAAGGCCGTCATC
CTCGAGGGTCTCCGGAAGCATCCGCCGGGCCACTTCGCGCTGCCACACAAGGCGGCGGAGGACATGGAGGTCGGCGGGTA
CCTCATCCCCAAGGGCGCCACGGTGAACTTCATGGTGGCCGAGATGGGAAGAGACGAGAAAGAATGGGAGAATCCAATGG
AGTTCATGCCGGAGAGGTTCCTCCCCGGCGGCGACGGCGAGGGGGTGGACGTGACGGGCAGCAAGGGGATCCGCATGATG
CCGTTCGGCGTCGGGCGGAGGATTTGCGCGGGGCTCAACACCGCCATGCTGCACCTGGAGTACTTCGTGGCCAATATGGT
CAGGGAGTTCGAGTGGAGGGAGATCGCCGGCGAAGAGGTGGACTTTGCCGAGAAGTTGGAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30695.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis