Browse Element(s) Details


OsAffx.30695.4.S1_x_at

Description tigr:9638.m03304
TID=OsAffx.30695.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g370208/11transposon protein, putative, unclassified
LOC_Os10g370345/11Cytochrome P450 family protein
LOC_Os10g371002/11Cytochrome P450 family protein
LOC_Os10g370502/11transposon protein, putative, unclassified, expressed
LOC_Os10g369601/11transposon protein, putative, unclassified, expressed
LOC_Os10g369801/11transposon protein, putative, unclassified, expressed
LOC_Os10g370701/11Cytochrome P450 family protein
LOC_Os10g371601/11transposon protein, putative, unclassified, expressed
LOC_Os06g426101/11Cytochrome P450 89A2, putative
LOC_Os10g371101/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36950Os.11620.1.S1_a_at11/1110+19471354..19474102IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os10g36960Os.46643.1.S1_x_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960Os.46643.1.S1_at11/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.2.S1_x_at4/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.3.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.1.S1_x_at2/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36960OsAffx.30695.4.S1_x_at1/1110+19474817..19476418transposon protein, putative, unclassified, expressed
LOC_Os10g36966OsAffx.7975.1.S1_at11/1110+19476908..19478454hypothetical protein
LOC_Os10g36972NANA10+19479494..19479922hypothetical protein
LOC_Os10g36980Os.17865.1.S1_at11/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.2.S1_x_at3/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.4.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980Os.46643.1.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36980OsAffx.30695.3.S1_x_at1/1110+19480575..19482362transposon protein, putative, unclassified, expressed
LOC_Os10g36984NANA10+19482711..19484390hypothetical protein
LOC_Os10g36990Os.35344.3.S1_x_at11/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990Os.35344.18.S1_x_at10/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g36990OsAffx.22940.5.S1_x_at2/1110+19485516..19491690transposon protein, putative, Mutator sub-class
LOC_Os10g37010OsAffx.13460.1.S1_at2/1110+19493697..19495523hypothetical protein
LOC_Os10g37020OsAffx.30695.4.S1_at10/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.4.S1_x_at8/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.2.S1_x_at3/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020OsAffx.30695.3.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37020Os.46643.1.S1_x_at1/1110+19497148..19498572transposon protein, putative, unclassified
LOC_Os10g37034Os.46592.1.S1_at11/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46592.2.S1_x_at9/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.2.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_x_at5/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.4.S1_at4/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.3.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.46643.1.S1_x_at2/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034OsAffx.30695.1.S1_x_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37034Os.51397.1.S1_at1/1110+19499596..19503060Cytochrome P450 family protein
LOC_Os10g37050OsAffx.30695.2.S1_x_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.2.S1_at11/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050Os.46643.1.S1_x_at3/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.4.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.3.S1_x_at2/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37050OsAffx.30695.1.S1_x_at1/1110+19508153..19509737transposon protein, putative, unclassified, expressed
LOC_Os10g37060Os.46503.1.S1_at11/1110+19510933..19512780T-complex protein 1, delta subunit, putative, expressed
LOC_Os10g37070OsAffx.30695.1.S1_x_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.1.S1_at11/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.3.S1_x_at6/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.4.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30695.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070OsAffx.30725.2.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37070Os.46643.1.S1_x_at1/1110+19517847..19519115Cytochrome P450 family protein
LOC_Os10g37079NANA10+19522165..19522383hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30695.4.S1_x_at--630--5831Chr10:19498024..19498048 (25 bp)
GACCTCAGGCTACCCGAGGACGGCA
LOC_Os10g37020
OsAffx.30695.4.S1_x_at--739--4571NONE
GCGCTCTCACCGACAAAGAGATGCT
NONE
OsAffx.30695.4.S1_x_at--878--2191Chr10:19498064..19498193 (25 bp)
ACAAAGAGATGCTCTACGACGAGAT
LOC_Os10g37020
OsAffx.30695.4.S1_x_at--420--9732Chr10:19502501..19502525 (25 bp)
TCAAGGCCACGGTAAGCGACGACCA
LOC_Os10g37034
OsAffx.30695.4.S1_x_at--993--8091Chr10:19498233..19498257 (25 bp)
GGACGACACCCAGAAGATGCCATAC
LOC_Os10g37020
OsAffx.30695.4.S1_x_at--561--5671Chr10:19498333..19498357 (25 bp)
GACATTGAAGTTGGCGGGTACCTCA
LOC_Os10g37020
OsAffx.30695.4.S1_x_at--43--19310Chr10:19476080..19476104 (25 bp)
ACGGTGAACTTCATGGTGGCCGAGA
LOC_Os10g36960
OsAffx.30695.4.S1_x_at--883--2613Chr10:19502731..19502755 (25 bp)
AACCCGATGCAGTTCATGCCGGAGA
LOC_Os10g37034
OsAffx.30695.4.S1_x_at--791--2792Chr10:19502803..19502827 (25 bp)
AAGAGGATCCGCATGATGCCGTTCG
LOC_Os10g37034
OsAffx.30695.4.S1_x_at--483--2171Chr10:19498550..19498574 (25 bp)
ACACCGCCATGCTGCACCTGTAGTA
NONE
OsAffx.30695.4.S1_x_at--390--5973Chr10:19502950..19502974 (25 bp)
GAGAAGTTGAGTTCACCACCGTCAT
LOC_Os10g37034
Target Sequence 
GACCTCAGGCTACCCGAGGACGGCAACCGCGCTCTCACCGACAAAGAGATGCTCTACGACGAGATCAAGGCCACGGTAAG
CGACGACCACGACGAGATCACCGAGGACGACACCCAGAAGATGCCATACCTAAAAGCCGTCATCCTCGAGGGTCTCCGGA
AGCATCCGCCGGGACACTTCGTGCTGGCGCACAAGGCGGCGGAGGACATTGAAGTTGGCGGGTACCTCATCCCCAAGGGC
GCGACGGTGAACTTCATGGTGGCCGAGATGGGAAGAGACGAGAGAGAATGGGAGAACCCGATGCAGTTCATGCCGGAGAG
GTTCCTCCCCGGCGGCGACGGCGAGGGAGTGGACATGACGGGCAGCAAGAGGATCCGCATGATGCCGTTCGGCGTCGGGC
GGAGGATGTGCGCAGGGCTCAACACCGCCATGCTGCACCTGTAGTACTTCGTGGCCAACATGGTGAGAGAGTTCGAGTGG
AAGGCGGTGGTCGGCGACAAGGTGGACTTCGCCGAGAAGTTGAGTTCACCACCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30695.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis