Browse Element(s) Details


OsAffx.13460.1.S1_at

Description tigr:9631.m05058
TID=OsAffx.13460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5175011/11hypothetical protein
LOC_Os10g370102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51740Os.53146.1.S1_at11/113+29611223..296134831-aminocyclopropane-1-carboxylate synthase 1, putative, expressed
LOC_Os03g51750OsAffx.13460.1.S1_at11/113+29627171..29627659hypothetical protein
LOC_Os03g51760Os.48811.1.S1_at11/113+29635994..29637557F-box domain containing protein, expressed
LOC_Os03g51770NANA3+29639540..29642980retrotransposon protein, putative, unclassified
LOC_Os03g51780NANA3+29643608..29649739retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13460.1.S1_at--158--9151Chr03:29627208..29627232 (25 bp)
TGCGTCGTCGATCGAGTCCAGTTGA
LOC_Os03g51750
OsAffx.13460.1.S1_at--458--6031Chr03:29627243..29627267 (25 bp)
GAGATGGATTATGCCTACCTCTTGC
LOC_Os03g51750
OsAffx.13460.1.S1_at--1040--4291Chr03:29627256..29627280 (25 bp)
CCTACCTCTTGCGTTTTGAATGTTC
LOC_Os03g51750
OsAffx.13460.1.S1_at--483--2592Chr03:29627394..29627418 (25 bp)
AACGCGATACCGAGGTTCGCTACGG
LOC_Os03g51750
OsAffx.13460.1.S1_at--583--5552Chr10:14896232..14896256 (25 bp)
GAAAGCGCGATATCGCCACGGTATC
NONE
OsAffx.13460.1.S1_at--827--1631Chr03:29627462..29627486 (25 bp)
AGCGTGACGGTCTCGTGCGTTGAAT
LOC_Os03g51750
OsAffx.13460.1.S1_at--787--7873Chr10:16016443..16016467 (25 bp)
GGTTATGCGATATCGACGCGGTATC
NONE
OsAffx.13460.1.S1_at--73--7872Chr03:29627541..29627565 (25 bp)
GGTATCGCGTTTCCACTGAGCGAGA
LOC_Os03g51750
OsAffx.13460.1.S1_at--463--1651Chr03:29627565..29627589 (25 bp)
AGCGCCACGTCATACCGATTTGGGA
LOC_Os03g51750
OsAffx.13460.1.S1_at--701--2151Chr03:29627593..29627617 (25 bp)
ACAGCTGGAGTGGTGCTATCGGTCT
LOC_Os03g51750
OsAffx.13460.1.S1_at--1103--7314Chr10:16016523..16016542 (20 bp)
GTGCTATCGGTCTCGCTTATTGGCA
NONE
Target Sequence 
TGCGTCGTCGATCGAGTCCAGTTGAGACCGGGAGAGAGATGGATTATGCCTACCTCTTGCGTTTTGAATGTTCGTTAAAT
CATAAATATACCATCGAAATCGCGGTTAGAAAACGCGATACCGAGGTTCGCTACGGGAAAGCGCGATATCGCCACGGTAT
CGCATTACCAATGCGCGAGAGCGTGACGGTCTCGTGCGTTGAATGGGCGAGGAGATTTGAGCTGGCGGTGTCGCTTGTTG
GTTATGCGATATCGACGCGGTATCGCGTTTCCACTGAGCGAGAGCGCCACGTCATACCGATTTGGGAGCAACAGCTGGAG
TGGTGCTATCGGTCTCGCTTATTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis