Browse Element(s) Details


Os.53146.1.S1_at

Description gb:M96672.1
DB_XREF= gi:294701
GEN=ACC1
TID=Os.53146.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53146 (NCBI UniGene Cluster)
DEF=Oryza sativa 1-aminocyclopropane-1 carboxylate synthase (ACC1) mRNA, complete cds.
PROD=1-aminocyclopropane-1-carboxylate synthase
FL= gb:M96672.1 gb:AK071011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5174011/111-aminocyclopropane-1-carboxylate synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51720OsAffx.3578.1.S1_at8/113+29587104..29588571hypothetical protein
LOC_Os03g51724NANA3+29597377..29598653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g51730OsAffx.19542.3.S1_x_at4/113+29599601..29601487retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g51740Os.53146.1.S1_at11/113+29611223..296134831-aminocyclopropane-1-carboxylate synthase 1, putative, expressed
LOC_Os03g51750OsAffx.13460.1.S1_at11/113+29627171..29627659hypothetical protein
LOC_Os03g51760Os.48811.1.S1_at11/113+29635994..29637557F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009693biological_processethylene biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53146.1.S1_at--505--8711Chr03:29612091..29612115 (25 bp)
TGTCCGCGGCGACCAAGATGTCCAG
LOC_Os03g51740
Os.53146.1.S1_at--245--9411Chr03:29612058..29612082 (25 bp)
TCGTGTCGTCCCAGACGCAGTACCT
LOC_Os03g51740
Os.53146.1.S1_at--481--4131Chr03:29612025..29612049 (25 bp)
CGCTGCTCGGCGACAGGGACTTCAC
LOC_Os03g51740
Os.53146.1.S1_at--1126--2091Chr03:29612013..29612037 (25 bp)
ACAGGGACTTCACCCGGAGCTACGT
LOC_Os03g51740
Os.53146.1.S1_at--264--1871Chr03:29611956..29611980 (25 bp)
ACGACCAGCTCGTGGACGGGCTCAG
LOC_Os03g51740
Os.53146.1.S1_at--669--6031Chr03:29611930..29611954 (25 bp)
GAGATCGGCATTGGGTGCCTGCCCA
LOC_Os03g51740
Os.53146.1.S1_at--483--8431Chr03:29611897..29611921 (25 bp)
GGCCTCTTCTGCTGGGTGGACATGA
LOC_Os03g51740
Os.53146.1.S1_at--37--1771Chr03:29611869..29611893 (25 bp)
ACCTGATGCGGAGCCGGTCGTTCGC
LOC_Os03g51740
Os.53146.1.S1_at--1128--9051Chr03:29611744..29611768 (25 bp)
TGCTTCGCCAACATGTCGGCCAAGA
LOC_Os03g51740
Os.53146.1.S1_at--537--651Chr03:29611705..29611729 (25 bp)
ATGCAGCGCCTCAGGTCGTTCGTCG
LOC_Os03g51740
Os.53146.1.S1_at--845--5291Chr03:29611559..29611583 (25 bp)
GAAGGCCGAGAGATAATCGCCAAGA
LOC_Os03g51740
Target Sequence 
TGTCCGCGGCGACCAAGATGTCCAGCTTCGGCCTCGTGTCGTCCCAGACGCAGTACCTCCTCGCGGCGCTGCTCGGCGAC
AGGGACTTCACCCGGAGCTACGTCGCGGAGAACAAGCGGCGGATCAAGGAGCGGCACGACCAGCTCGTGGACGGGCTCAG
GGAGATCGGCATTGGGTGCCTGCCCAGCAACGCCGGCCTCTTCTGCTGGGTGGACATGAGCCACCTGATGCGGAGCCGGT
CGTTCGCCGGCGAGATGGAGCTCTGGAAGAAGGTGGTGTTCGAGGTCGGCCTCAACATCTCCCCCGGGTCGTCGTGCCAC
TGCCGCGAGCCCGGCTGGTTCCGCGTCTGCTTCGCCAACATGTCGGCCAAGACCCTCGACGTCGCCATGCAGCGCCTCAG
GTCGTTCGTCGACTCCGCCACCGGCGGCGGCGACAACGCCGCCCTCCGCCGCGCCGCCGTCCCCGTCAGGAGCGTCAGCT
GCCCGCTCGCCATCAAGTGGGCGCTCCGCCTCACCCCGTCCATCGCCGACCGGAAGGCCGAGAGATAATCGCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis