Browse Element(s) Details


OsAffx.3578.1.S1_at

Description tigr:9631.m05054
TID=OsAffx.3578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g517208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51700Os.52656.1.S1_at11/113+29574788..29577289expressed protein
LOC_Os03g51710Os.1855.1.S1_at11/113+29577322..29583310KNOX1 domain containing protein, expressed
LOC_Os03g51720OsAffx.3578.1.S1_at8/113+29587104..29588571hypothetical protein
LOC_Os03g51724NANA3+29597377..29598653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g51730OsAffx.19542.3.S1_x_at4/113+29599601..29601487retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g51740Os.53146.1.S1_at11/113+29611223..296134831-aminocyclopropane-1-carboxylate synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3578.1.S1_at--921--8131Chr03:29588494..29588518 (25 bp)
GGACAGCCGGGCGTCGTCAGTCCAA
LOC_Os03g51720
OsAffx.3578.1.S1_at--494--4251Chr03:29588488..29588512 (25 bp)
CCGGGCGTCGTCAGTCCAAGGAGCA
LOC_Os03g51720
OsAffx.3578.1.S1_at--85--831Chr03:29588406..29588430 (25 bp)
ATGGATTGCGGTGACCATTGGCAGC
LOC_Os03g51720
OsAffx.3578.1.S1_at--14--10591NONE
TTCGGCTCTACTCCGGAATTTTGAG
NONE
OsAffx.3578.1.S1_at--832--8271NONE
GGCTCTACTCCGGAATTTTGAGGGT
NONE
OsAffx.3578.1.S1_at--1074--9511NONE
TCTACTCCGGAATTTTGAGGGTGGG
NONE
OsAffx.3578.1.S1_at--1017--7631Chr03:29587406..29587430 (25 bp)
GGGAGGTAGGAACTAAACTCATATT
LOC_Os03g51720
OsAffx.3578.1.S1_at--987--2991Chr03:29587188..29587399 (25 bp)
AATGCATGAGGTGTTAATGGCTATC
LOC_Os03g51720
OsAffx.3578.1.S1_at--850--4991Chr03:29587185..29587360 (25 bp)
GCATGAGGTGTTAATGGCTATCAAT
LOC_Os03g51720
OsAffx.3578.1.S1_at--53--8312Chr01:34795532..34795556 (25 bp)
GGCTATCAATAGAGGTGACGGCAAT
NONE
OsAffx.3578.1.S1_at--821--1931Chr03:29587153..29587177 (25 bp)
ACGGCAATGGCGGAGCCCAGGCGGC
LOC_Os03g51720
Target Sequence 
GGACAGCCGGGCGTCGTCAGTCCAAGGAGCAGCCGGTTGGAGGGGAGGCGCGGGCGGAGACCCCGAGCGGCGTGGATGGC
GGGGCGGCATGGATTGCGGTGACCATTGGCAGCGGGGATGGCGGGGTGCTTCGGCGACCTCACTGCCAGATCCGCGCCTC
TCCGCCTCTACTCCGGTGATCTCCACCTCCAGATCCACCACCTCTCTTCGGCTCTACTCCGGAATTTTGAGGGTGGGGGA
GGTAGGAACTAAACTCATATTAAGAATAATGCATGAGGTGTTAATGGCTATCAATAGAGGTGACGGCAATGGCGGAGCCC
AGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis