Browse Element(s) Details


Os.52656.1.S1_at

Description gb:AK068587.1
DB_XREF= gi:32978604
TID=Os.52656.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153F04, full insert sequence.
FL= gb:AK068587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5170011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51690Os.151.2.S1_at11/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51690Os.151.1.S1_x_at10/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51700Os.52656.1.S1_at11/113+29574788..29577289expressed protein
LOC_Os03g51710Os.1855.1.S1_at11/113+29577322..29583310KNOX1 domain containing protein, expressed
LOC_Os03g51720OsAffx.3578.1.S1_at8/113+29587104..29588571hypothetical protein
LOC_Os03g51724NANA3+29597377..29598653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g51730OsAffx.19542.3.S1_x_at4/113+29599601..29601487retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52656.1.S1_at--774--5951Chr03:29576850..29576874 (25 bp)
GAGAATTGCCGCTGAAGGTCCAGAA
LOC_Os03g51700
Os.52656.1.S1_at--545--5571Chr03:29576872..29576896 (25 bp)
GAAAGTCTGCGATCGTCTGTTCAAC
LOC_Os03g51700
Os.52656.1.S1_at--1120--8771Chr03:29576889..29576913 (25 bp)
TGTTCAACCTTTCACCACTAGTAAA
LOC_Os03g51700
Os.52656.1.S1_at--388--2471Chr03:29576949..29576973 (25 bp)
AACACAGTCCTGAATTGCACACAAT
LOC_Os03g51700
Os.52656.1.S1_at--1014--5111Chr03:29576965..29576989 (25 bp)
GCACACAATCTGTCTGATACTCTGA
LOC_Os03g51700
Os.52656.1.S1_at--874--6471Chr03:29576980..29577004 (25 bp)
GATACTCTGATTGGTACGCCATCAA
LOC_Os03g51700
Os.52656.1.S1_at--454--3891Chr03:29577066..29577090 (25 bp)
CTGTGTAGTGTGTACCCTCTCTGTA
LOC_Os03g51700
Os.52656.1.S1_at--77--10451Chr03:29577113..29577137 (25 bp)
TTAGACGTCAGATCTTCTCAGCTCT
LOC_Os03g51700
Os.52656.1.S1_at--46--1591Chr03:29577132..29577156 (25 bp)
AGCTCTTATTGCAACATTCGTCCAT
LOC_Os03g51700
Os.52656.1.S1_at--1018--10331Chr03:29577226..29577250 (25 bp)
TTTAGGTTCAGTTGCTTGTCTTCAC
LOC_Os03g51700
Os.52656.1.S1_at--1074--2451Chr03:29577265..29577289 (25 bp)
AACAAGAGCGTGTGTCTGTCTGATT
LOC_Os03g51700
Target Sequence 
GAGAATTGCCGCTGAAGGTCCAGAAAGTCTGCGATCGTCTGTTCAACCTTTCACCACTAGTAAAATGGAGCCAAGAGAGA
GCGAAACACTTGATCTGAAAACACAGTCCTGAATTGCACACAATCTGTCTGATACTCTGATTGGTACGCCATCAAAGGCA
TCAGAAGGAACTACACTGACATTTCCTAATTCCAAAGGGTAGCTGCACCATGCCCCCTGTGTAGTGTGTACCCTCTCTGT
ACATCCATACTATGGCAGTATGGTTAGACGTCAGATCTTCTCAGCTCTTATTGCAACATTCGTCCATCTTTTGTAAAGCT
AAACTGTTCATGTACACAGATCTGTACAACCAAATATTAACATCAGAAGTGCATGATTTAGGTTCAGTTGCTTGTCTTCA
CTGCATATATACAGTAACAAGAGCGTGTGTCTGTCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis