Browse Element(s) Details


Os.151.1.S1_x_at

Description gb:AK107637.1
DB_XREF= gi:32992846
TID=Os.151.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSH1 gene for homeobox protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E10, full insert sequence.
FL= gb:AK107637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5169010/11Homeobox protein OSH1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51660OsAffx.25680.1.S1_at10/113+29533678..29535394hypothetical protein
LOC_Os03g51670Os.54070.1.S1_at11/113+29536489..29541868serine esterase family protein, expressed
LOC_Os03g51680Os.53824.1.S1_x_at11/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51680Os.53425.1.S1_at10/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51690Os.151.2.S1_at11/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51690Os.151.1.S1_x_at10/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51700Os.52656.1.S1_at11/113+29574788..29577289expressed protein
LOC_Os03g51710Os.1855.1.S1_at11/113+29577322..29583310KNOX1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.151.1.S1_x_at--1064--5891Chr03:29548582..29548606 (25 bp)
GAGCTGCACTACAAATGGCCTTACC
LOC_Os03g51690
Os.151.1.S1_x_at--127--8191Chr03:29547386..29547410 (25 bp)
GGAAGCCCTCCGACGAGATGCAGTT
LOC_Os03g51690
Os.151.1.S1_x_at--654--1571Chr03:29547243..29547267 (25 bp)
AGCTACCATGACCTAGATCGATCTC
LOC_Os03g51690
Os.151.1.S1_x_at--184--3711Chr03:29547161..29547185 (25 bp)
CTAGGTTAGTCTTCCTGGTAATTTG
LOC_Os03g51690
Os.151.1.S1_x_at--241--7071NONE
GTAATTTGATGCTCGCACGTACGCA
NONE
Os.151.1.S1_x_at--719--7311Chr03:29547103..29547127 (25 bp)
GTGCTTATTTTGTTTCTTGCCGCAA
LOC_Os03g51690
Os.151.1.S1_x_at--375--10451Chr03:29547061..29547085 (25 bp)
TTAGCTAATGCATCAACTCGGGTCG
LOC_Os03g51690
Os.151.1.S1_x_at--626--2491Chr03:29547047..29547071 (25 bp)
AACTCGGGTCGGTTTTAGCTGCTGC
LOC_Os03g51690
Os.151.1.S1_x_at--391--4391Chr03:29546971..29546995 (25 bp)
GCCAAGACGTACACATTGCTTCGAA
LOC_Os03g51690
Os.151.1.S1_x_at--1014--10631Chr03:29546952..29546976 (25 bp)
TTCGAAATGTCGCTACTCTTGCTGC
LOC_Os03g51690
Os.151.1.S1_x_at--811--4772Chr03:26241308..26241817 (25 bp)
GCTGCTGCTAATTAAGTGCGTGTTT
NONE
Target Sequence 
GAGCTGCACTACAAATGGCCTTACCCCTCGGAGAGTCAGAAGGTGGCACTGGCGGAGTCGACGGGGCTGGACCTGAAGCA
GATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCCTCCGACGAGATGCAGTTCGTGATGATGGACGGCT
ACCACCCGACCAACGCCGCCGCCTTCTACATGGACGGCCACTTCATCAACGACGGCGGCCTCTACAGGCTCGGCTAGCTA
GCTAGCCTACTCCTTATCCCCAGCTACCATGACCTAGATCGATCTCGACCCCAAATCAATGGTCGCTAAGCTACTGAAAA
GTTTGTGATGAGAATTGAAGAACCTAGGTTAGTCTTCCTGGTAATTTGATGCTCGCACGTACGCACGCCATGGATGGCTG
CGTGCTTATTTTGTTTCTTGCCGCAATATGTAATGCAATTGCCTTAGCTAATGCATCAACTCGGGTCGGTTTTAGCTGCT
GCTGCTGCGCCACAATGAGGTGGTTGTGGTTATGCTTTTGTGTGGTTTAATACGCCAAGACGTACACATTGCTTCGAAAT
GTCGCTACTCTTGCTGCTGCTAATTAAGTGCGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.151.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis