Browse Element(s) Details


Os.1855.1.S1_at

Description gb:AB028882.1
DB_XREF= gi:5103722
GEN=OSH3
TID=Os.1855.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1855 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for knotted1-type homeobox protein OSH3, complete cds.
PROD=knotted1-type homeobox protein OSH3
FL= gb:AB071664.1 gb:AB071663.1 gb:AB028882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5171011/11KNOX1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51690Os.151.2.S1_at11/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51690Os.151.1.S1_x_at10/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51700Os.52656.1.S1_at11/113+29574788..29577289expressed protein
LOC_Os03g51710Os.1855.1.S1_at11/113+29577322..29583310KNOX1 domain containing protein, expressed
LOC_Os03g51720OsAffx.3578.1.S1_at8/113+29587104..29588571hypothetical protein
LOC_Os03g51724NANA3+29597377..29598653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g51730OsAffx.19542.3.S1_x_at4/113+29599601..29601487retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1855.1.S1_at--949--9331Chr03:29577888..29577912 (25 bp)
TCGCTCCGACGACAAAGCGCTGAAG
LOC_Os03g51710
Os.1855.1.S1_at--902--5611Chr03:29577878..29577902 (25 bp)
GACAAAGCGCTGAAGAGGCACCTGC
LOC_Os03g51710
Os.1855.1.S1_at--644--2791Chr03:29577866..29577890 (25 bp)
AAGAGGCACCTGCTGAGGAAGTACA
LOC_Os03g51710
Os.1855.1.S1_at--765--3411Chr03:29577767..29577791 (25 bp)
CAGAAGCTGCTCACCTGGTGGGAGC
LOC_Os03g51710
Os.1855.1.S1_at--1152--7631Chr03:29577748..29577772 (25 bp)
GGGAGCTCCATTACCGGTGGCCGAA
LOC_Os03g51710
Os.1855.1.S1_at--979--7431Chr03:29577494..29577518 (25 bp)
GTGTACACCGCCAGGCCGGATCATG
LOC_Os03g51710
Os.1855.1.S1_at--715--411Chr03:29577475..29577499 (25 bp)
ATCATGGCGTGTGGCGCGCATAGCC
LOC_Os03g51710
Os.1855.1.S1_at--1057--291Chr03:29577456..29577480 (25 bp)
ATAGCCGTTGCTCGATTCGCCCGTT
LOC_Os03g51710
Os.1855.1.S1_at--145--8211Chr03:29577421..29577445 (25 bp)
GGAATTAATCTGAACTGCCCTTGCC
LOC_Os03g51710
Os.1855.1.S1_at--1131--3811Chr03:29577407..29577431 (25 bp)
CTGCCCTTGCCTGTTACATATAGTA
LOC_Os03g51710
Os.1855.1.S1_at--255--6252Chr02:29255840..29255860 (21 bp)
GATGGTTTCATATGTTTTTCCCCAA
NONE
Target Sequence 
TCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCTGT
CGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGG
CCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCAT
CAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCACCG
ATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTAC
ACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAGCCGTTGCTCGATTCGCCCGTTGCCGCCATCTGGAATTAATCTGA
ACTGCCCTTGCCTGTTACATATAGTAGGGTTGTTGATGATGGTTTCATATGTTTTTCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis