Browse Element(s) Details


Os.54070.1.S1_at

Description gb:AK101683.1
DB_XREF= gi:32986892
TID=Os.54070.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058M21, full insert sequence.
FL= gb:AK101683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5167011/11serine esterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein
LOC_Os03g51660OsAffx.25680.1.S1_at10/113+29533678..29535394hypothetical protein
LOC_Os03g51670Os.54070.1.S1_at11/113+29536489..29541868serine esterase family protein, expressed
LOC_Os03g51680Os.53824.1.S1_x_at11/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51680Os.53425.1.S1_at10/113+29543527..29546348Ubiquitin ligase protein FANCL, putative, expressed
LOC_Os03g51690Os.151.2.S1_at11/113+29546838..29557422Homeobox protein OSH1, putative, expressed
LOC_Os03g51690Os.151.1.S1_x_at10/113+29546838..29557422Homeobox protein OSH1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54070.1.S1_at--1049--2351Chr03:29538484..29538508 (25 bp)
AAAGCCGAAGGTTCAGGATACTGAT
LOC_Os03g51670
Os.54070.1.S1_at--102--5471Chr03:29537754..29537778 (25 bp)
GAACTGATGCTCAAAGGTCTGAACA
LOC_Os03g51670
Os.54070.1.S1_at--177--10271Chr03:29537678..29537700 (23 bp)
TTTGCTCATAGCACCATTCAGGTCA
LOC_Os03g51670
Os.54070.1.S1_at--972--3451Chr03:29536875..29536899 (25 bp)
CAGGTCAAGACCTATTTCTTCAACT
LOC_Os03g51670
Os.54070.1.S1_at--423--6391Chr03:29536822..29536846 (25 bp)
GATCGACCATTTTCTTTATTAACAT
LOC_Os03g51670
Os.54070.1.S1_at--1024--4151Chr03:29536759..29536783 (25 bp)
CCCACTTTGTTTTTATCCCATCTGG
LOC_Os03g51670
Os.54070.1.S1_at--478--9311Chr03:29536744..29536768 (25 bp)
TCCCATCTGGAGTTTACTTTCACTT
LOC_Os03g51670
Os.54070.1.S1_at--429--5331Chr03:29536661..29536685 (25 bp)
GAAGTACAGTAGATCCCCATAGTAA
LOC_Os03g51670
Os.54070.1.S1_at--186--10671Chr03:29536552..29536576 (25 bp)
TTCCGGGCTTCAGTGGCTCAGTGAC
LOC_Os03g51670
Os.54070.1.S1_at--444--4811Chr03:29536537..29536561 (25 bp)
GCTCAGTGACAGTGTACATGCATGT
LOC_Os03g51670
Os.54070.1.S1_at--524--8731Chr03:29536515..29536539 (25 bp)
TGTAATGGACCACATTCTGCTGCTC
LOC_Os03g51670
Target Sequence 
AAAGCCGAAGGTTCAGGATACTGATTTTTCAGATTCAATGATATATCAGGCGAAAAATACAAGTGAAATGGAAGAACTGA
TGCTCAAAGGTCTGAACAGAATTCCATGGGAAAGGGTAGATGTTAGCTTCAAGAAAAGTAGACAAAGGATTTTTGCTCAT
AGCACCATTCAGGTCAAGACCTATTTCTTCAACTCTGATGGGGCTGATGTGATTTTTCACATGATCGACCATTTTCTTTA
TTAACATTGGTCGGGATGGGAGGGTGGCGGTAACGAGGAAGCTCCCCCACTTTGTTTTTATCCCATCTGGAGTTTACTTT
CACTTTGACACGAAAAAATGTGAAGAAATGTTTTTTTCAGGATAACTAGAATTGTTACCGGAAGAAGTACAGTAGATCCC
CATAGTAAAGATAGGTGTTGGATGTAGTGGAGTATGTGTCTTGTAAACTTTGGGTCTCCGAGGTTGGTTTTTTTTTTCCT
TCTCTCTGTCTCTTCCGGGCTTCAGTGGCTCAGTGACAGTGTACATGCATGTAATGGACCACATTCTGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis