Browse Element(s) Details


Os.11802.1.S1_at

Description gb:AK069807.1
DB_XREF= gi:32979831
TID=Os.11802.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.11802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028O14, full insert sequence.
FL= gb:AK069807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed
LOC_Os03g51640Os.9036.1.S1_at10/113+29507217..29510153expressed protein
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein
LOC_Os03g51660OsAffx.25680.1.S1_at10/113+29533678..29535394hypothetical protein
LOC_Os03g51670Os.54070.1.S1_at11/113+29536489..29541868serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11802.1.S1_at--116--9351Chr03:29511926..29511948 (23 bp)
TCGCGAGTGCTCTTACAATGGGTGT
LOC_Os03g51650
Os.11802.1.S1_at--784--7351Chr03:29511536..29511560 (25 bp)
GTGAAGAACCCATCAGACTGTCCAT
LOC_Os03g51650
Os.11802.1.S1_at--602--9011Chr03:29511394..29511418 (25 bp)
TGCAAGCGCACGTCCGACAAAGTAT
LOC_Os03g51650
Os.11802.1.S1_at--538--2371Chr03:29511313..29511337 (25 bp)
AAACCCTATCTCTTGGTCTTGTAAG
LOC_Os03g51650
Os.11802.1.S1_at--504--3651Chr03:29511285..29511309 (25 bp)
CTTCTGGTCTTTTTGTCATGCATGC
LOC_Os03g51650
Os.11802.1.S1_at--950--9611Chr03:29511270..29511294 (25 bp)
TCATGCATGCGTTAGCTCCTGGCTA
LOC_Os03g51650
Os.11802.1.S1_at--1093--8051Chr03:29511223..29511247 (25 bp)
GGAGAAATCGCAGCTATGCCCATTC
LOC_Os03g51650
Os.11802.1.S1_at--213--611Chr03:29511208..29511232 (25 bp)
ATGCCCATTCATTCTTGTGCTTGCT
LOC_Os03g51650
Os.11802.1.S1_at--718--8311Chr03:29511180..29511204 (25 bp)
GGCTAAGCTAGCCTGCAAATGGTTA
LOC_Os03g51650
Os.11802.1.S1_at--281--7451Chr03:29511143..29511167 (25 bp)
GTGTAAATATGCCAGCCCATTCCTT
LOC_Os03g51650
Os.11802.1.S1_at--147--4551Chr03:29511129..29511153 (25 bp)
GCCCATTCCTTCTGTCAATATACAA
LOC_Os03g51650
Target Sequence 
TCGCGAGTGCTCTTACAATGGGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACATGGGGTTC
CTCGACTTCTGCGAGAAGTGAAGAACCCATCAGACTGTCCATACTCTCTGGGGGAAATCCAGGTCAACACCTAATTGACC
TCACCTCCCCCAAATTTAAACGAGAAAAGAAATAAGGTCGTGAAGTGCACATATGCACCGCGTTAGCGCCTCGCTAACCT
GCAAGCGCACGTCCGACAAAGTATCGTAGTGTATTCCAGTTTTCATGGCATATGCATGTGTTAGCTCCTGGCTAACCTGC
AAACCCTATCTCTTGGTCTTGTAAGAGTCTTCTGGTCTTTTTGTCATGCATGCGTTAGCTCCTGGCTAACCTGCAATTTA
GTTTCTCTAGGGAGAAATCGCAGCTATGCCCATTCATTCTTGTGCTTGCTCCTGGCTAAGCTAGCCTGCAAATGGTTATT
GTATGGAACAGTGTAAATATGCCAGCCCATTCCTTCTGTCAATATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis