Browse Element(s) Details


Os.15197.1.S2_at

Description gb:AK110903.1
DB_XREF= gi:32996112
TID=Os.15197.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B04, full insert sequence.
FL= gb:AK067068.1 gb:AK110903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5161011/11inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51590OsAffx.25679.1.S1_at11/113+29471317..29472768hypothetical protein
LOC_Os03g51600Os.12692.1.S1_x_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.12692.1.S1_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.21762.2.S1_x_at2/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed
LOC_Os03g51640Os.9036.1.S1_at10/113+29507217..29510153expressed protein
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15197.1.S2_at--828--5431Chr03:29493419..29493443 (25 bp)
GAACCGGTGGCAAACATTGGACACA
LOC_Os03g51610
Os.15197.1.S2_at--167--3292Chr03:29493440..29493464 (25 bp)
CACAACTTCATTTTGGTGGGCCCGG
LOC_Os03g51610
Os.15197.1.S2_at--907--1151Chr03:29493466..29493490 (25 bp)
AGTAAACGTGGCGTGTGGCTTTCTC
LOC_Os03g51610
Os.15197.1.S2_at--1073--8291Chr03:29493482..29493506 (25 bp)
GGCTTTCTCCTTTGCCAACGTGGGA
LOC_Os03g51610
Os.15197.1.S2_at--1061--8971Chr03:29493516..29493540 (25 bp)
TGAACGCAAGCCCAAACGCACTAAG
LOC_Os03g51610
Os.15197.1.S2_at--792--3731Chr03:29493536..29493560 (25 bp)
CTAAGAGTTCGTAGTACTTCCACTA
LOC_Os03g51610
Os.15197.1.S2_at--831--7951Chr03:29493600..29493624 (25 bp)
GGATCCTCTGCCTTTTGGTACTAAA
LOC_Os03g51610
Os.15197.1.S2_at--992--2271Chr03:29493713..29493737 (25 bp)
AAATGCTGTGCATTTCGCACTGTTC
LOC_Os03g51610
Os.15197.1.S2_at--13--211Chr03:29493724..29493748 (25 bp)
ATTTCGCACTGTTCACGTATCGTTG
LOC_Os03g51610
Os.15197.1.S2_at--777--4011Chr03:29493739..29493763 (25 bp)
CGTATCGTTGTAGCGTACTGTAGCA
LOC_Os03g51610
Os.15197.1.S2_at--27--5211Chr03:29493761..29493785 (25 bp)
GCAATTGATCTTATCCGTTCACTGT
LOC_Os03g51610
Target Sequence 
GAACCGGTGGCAAACATTGGACACAACTTCATTTTGGTGGGCCCGGAAGTAAACGTGGCGTGTGGCTTTCTCCTTTGCCA
ACGTGGGAGGGAGAGGCTGAACGCAAGCCCAAACGCACTAAGAGTTCGTAGTACTTCCACTACTGTAGTTTGACAGTTCT
TACAACCCCTCCTAACAGAAAGGATCCTCTGCCTTTTGGTACTAAAGGCAGAGAAGTGCAGTAAAGTCTTGTGTTACAGT
ACAAAACAATGATGTGCAGTTGTTTGCTGTAGCAACAGTATAAAAACAGTGAAAAAATGCTGTGCATTTCGCACTGTTCA
CGTATCGTTGTAGCGTACTGTAGCAATTGATCTTATCCGTTCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15197.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis