Browse Element(s) Details


OsAffx.3577.1.S1_at

Description tigr:9631.m05039
TID=OsAffx.3577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5157011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51550Os.25532.1.S1_a_at10/113+29436578..29441090Will die slowly protein, putative, expressed
LOC_Os03g51556OsAffx.13459.1.S1_at10/113+29442658..29445497hypothetical protein
LOC_Os03g51562NANA3+29449881..29450079NA
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51590OsAffx.25679.1.S1_at11/113+29471317..29472768hypothetical protein
LOC_Os03g51600Os.12692.1.S1_x_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.12692.1.S1_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.21762.2.S1_x_at2/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3577.1.S1_at--113--9291Chr03:29464253..29464277 (25 bp)
TCCGGGTTGATTTGTTTATTACGCG
LOC_Os03g51570
OsAffx.3577.1.S1_at--114--6531Chr03:29464261..29464285 (25 bp)
GATTTGTTTATTACGCGTGATCACA
LOC_Os03g51570
OsAffx.3577.1.S1_at--1045--9931Chr03:29464272..29464296 (25 bp)
TACGCGTGATCACAATTTACCAAAT
LOC_Os03g51570
OsAffx.3577.1.S1_at--1100--31Chr03:29464295..29464319 (25 bp)
ATTGTCGTGTGCCTTGAGATCGAAG
LOC_Os03g51570
OsAffx.3577.1.S1_at--419--2731Chr03:29464332..29464356 (25 bp)
AAGCAATGCAAGTGCCGGAGCCCAG
LOC_Os03g51570
OsAffx.3577.1.S1_at--74--1131Chr03:29464342..29464366 (25 bp)
AGTGCCGGAGCCCAGTCCTTATGGT
LOC_Os03g51570
OsAffx.3577.1.S1_at--659--7251Chr03:29464356..29464380 (25 bp)
GTCCTTATGGTCCATCTAGGCAGCA
LOC_Os03g51570
OsAffx.3577.1.S1_at--387--7271Chr03:29464365..29464389 (25 bp)
GTCCATCTAGGCAGCAGGGATGCAT
LOC_Os03g51570
OsAffx.3577.1.S1_at--154--7991Chr03:29464382..29464406 (25 bp)
GGATGCATGGTGAAATGGCCTCACA
LOC_Os03g51570
OsAffx.3577.1.S1_at--818--2951Chr03:29464395..29464584 (25 bp)
AATGGCCTCACAGAAAGGCAGGTAT
LOC_Os03g51570
OsAffx.3577.1.S1_at--773--7611Chr03:29464586..29464610 (25 bp)
GGGAAGCTTCTTTGGCAACTGAAGA
LOC_Os03g51570
Target Sequence 
TCCGGGTTGATTTGTTTATTACGCGTGATCACAATTTACCAAATTGTCGTGTGCCTTGAGATCGAAGAGCAGAACAAACA
AGCAATGCAAGTGCCGGAGCCCAGTCCTTATGGTCCATCTAGGCAGCAGGGATGCATGGTGAAATGGCCTCACAGAAAGG
CAGGTATGGGGAAGCTTCTTTGGCAACTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis