Browse Element(s) Details


OsAffx.13459.1.S1_at

Description tigr:9631.m05037
TID=OsAffx.13459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5155610/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51550Os.25532.1.S1_a_at10/113+29436578..29441090Will die slowly protein, putative, expressed
LOC_Os03g51556OsAffx.13459.1.S1_at10/113+29442658..29445497hypothetical protein
LOC_Os03g51562NANA3+29449881..29450079NA
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13459.1.S1_at--877--3391Chr03:29445430..29445454 (25 bp)
CAGCTGTAGAGCGACTGGTCAGATA
LOC_Os03g51556
OsAffx.13459.1.S1_at--992--5871Chr03:29445422..29445446 (25 bp)
GAGCGACTGGTCAGATATGAAGAGA
LOC_Os03g51556
OsAffx.13459.1.S1_at--388--131Chr03:29445399..29445422 (24 bp)
ATGGGATCCATATGGGTATTTTGGC
LOC_Os03g51556
OsAffx.13459.1.S1_at--671--7611NONE
GGGTATTTTGGCTTCTTCAGAGGCA
NONE
OsAffx.13459.1.S1_at--633--10231Chr03:29442758..29442779 (22 bp)
TTTGGCTTCTTCAGAGGCAAATAGA
LOC_Os03g51556
OsAffx.13459.1.S1_at--77--1431Chr03:29442736..29442760 (25 bp)
AGAAACAGTGGTAGTATATCTCATG
LOC_Os03g51556
OsAffx.13459.1.S1_at--350--6891Chr03:29442723..29442747 (25 bp)
GTATATCTCATGAATATGCCCCTCA
LOC_Os03g51556
OsAffx.13459.1.S1_at--81--451Chr03:29442719..29442743 (25 bp)
ATCTCATGAATATGCCCCTCAATGC
LOC_Os03g51556
OsAffx.13459.1.S1_at--1073--251Chr03:29442710..29442734 (25 bp)
ATATGCCCCTCAATGCAACTATGCA
LOC_Os03g51556
OsAffx.13459.1.S1_at--1017--651Chr03:29442698..29442722 (25 bp)
ATGCAACTATGCAAGTGCCCAAGTT
LOC_Os03g51556
OsAffx.13459.1.S1_at--417--5171Chr03:29442688..29442712 (25 bp)
GCAAGTGCCCAAGTTGCAAGCTAGG
LOC_Os03g51556
Target Sequence 
CAGCTGTAGAGCGACTGGTCAGATATGAAGAGATGGGATCCATATGGGTATTTTGGCTTCTTCAGAGGCAAATAGAAACA
GTGGTAGTATATCTCATGAATATGCCCCTCAATGCAACTATGCAAGTGCCCAAGTTGCAAGCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis