Browse Element(s) Details


Os.54698.1.S1_at

Description gb:AK106493.1
DB_XREF= gi:32991702
TID=Os.54698.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-B05, full insert sequence.
FL= gb:AK106493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5153011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51490Os.31771.3.S1_at10/113+29407570..29409263expressed protein
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51550Os.25532.1.S1_a_at10/113+29436578..29441090Will die slowly protein, putative, expressed
LOC_Os03g51556OsAffx.13459.1.S1_at10/113+29442658..29445497hypothetical protein
LOC_Os03g51562NANA3+29449881..29450079NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54698.1.S1_at--978--1911Chr03:29429869..29429893 (25 bp)
ACGGCCCCGAGGATCCGAAGCGAGA
LOC_Os03g51530
Os.54698.1.S1_at--469--4611Chr03:29429888..29429912 (25 bp)
GCGAGAGAAAGCGATGGCCCCGACC
LOC_Os03g51530
Os.54698.1.S1_at--575--511Chr03:29429915..29429939 (25 bp)
ATCGATGCTGTTCCTGAGCTACCAC
LOC_Os03g51530
Os.54698.1.S1_at--988--3891Chr03:29430239..29430263 (25 bp)
CTGGTCTTCTTGAACATCTAAATTA
LOC_Os03g51530
Os.54698.1.S1_at--155--2091Chr03:29430252..29430276 (25 bp)
ACATCTAAATTAGCTCTTTGCGATA
LOC_Os03g51530
Os.54698.1.S1_at--322--10211Chr03:29430283..29430307 (25 bp)
TATTATCCCACATGTACATAGGTAG
LOC_Os03g51530
Os.54698.1.S1_at--625--9111Chr03:29430314..29430338 (25 bp)
TGCTGCTAGTGCCAAGCACATGCAC
LOC_Os03g51530
Os.54698.1.S1_at--921--8771Chr03:29430361..29430385 (25 bp)
TGTTTGCTATGATATTGCCGCTCTG
LOC_Os03g51530
Os.54698.1.S1_at--592--4811Chr03:29430380..29430404 (25 bp)
GCTCTGTTCCTGCATCTGCATGTTA
LOC_Os03g51530
Os.54698.1.S1_at--94--3851Chr03:29430389..29430413 (25 bp)
CTGCATCTGCATGTTAGCTTGTACA
LOC_Os03g51530
Os.54698.1.S1_at--863--6271Chr03:29430416..29430440 (25 bp)
GATGTATAATCGATTTCCTTTTCTT
LOC_Os03g51530
Target Sequence 
ACGGCCCCGAGGATCCGAAGCGAGAGAAAGCGATGGCCCCGACCGCATCGATGCTGTTCCTGAGCTACCACCAGCTGCAC
AGGCCCGCCTCTGCGGCGGAGGCGGCGCCGGCCAGCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGC
CGGCGGTCGCGTCCGGGTCAGCCTGAGCAGCGCGCTGTCCCTCCTGGCACGGCGGAGGGAGGCGGCGCCGACGCCGACGC
CGCAGGCCGCCGCGGCGAAGGAGGTGACCAGGCGTGGCGGTGGTGGTGGAGATGGCGTCGCCGGCGAGGGTGAGCCGGAG
GAGGCGGCGTCGCTGGAGCGTAGGTTCGAGGAGGCGGTCCGGCTCAGCTGCTGGTCTTCTTGAACATCTAAATTAGCTCT
TTGCGATAATTGCATATTATCCCACATGTACATAGGTAGTGCTACTGCTGCTAGTGCCAAGCACATGCACCTTTTTTTTT
CTTTTTTCTTTTGTTTGCTATGATATTGCCGCTCTGTTCCTGCATCTGCATGTTAGCTTGTACATGGATGTATAATCGAT
TTCCTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis