Browse Element(s) Details


Os.7389.1.S1_at

Description gb:AK059294.1
DB_XREF= gi:32969312
TID=Os.7389.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E08, full insert sequence.
FL= gb:AK119694.1 gb:AK059294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5151011/11Mitochondrial 60S ribosomal protein L6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51470Os.10468.1.S1_at11/113+29401687..29404169expressed protein
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51490Os.31771.3.S1_at10/113+29407570..29409263expressed protein
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51550Os.25532.1.S1_a_at10/113+29436578..29441090Will die slowly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7389.1.S1_at--630--3051Chr03:29415730..29415754 (25 bp)
AATCGGGTGCACAACTTTGCGGGCG
LOC_Os03g51510
Os.7389.1.S1_at--504--4731Chr03:29415754..29415778 (25 bp)
GCTGTTCGGAACTGTAAGCCTCCAG
LOC_Os03g51510
Os.7389.1.S1_at--634--7652Chr03:29415860..29415884 (25 bp)
GGGATGAGCCTCCATATTTTACTTT
LOC_Os03g51510
Os.7389.1.S1_at--515--7551Chr03:29415916..29415940 (25 bp)
GTGGCGCATATGTTCTTGTGGTTTT
LOC_Os03g51510
Os.7389.1.S1_at--220--9591Chr03:29415940..29415964 (25 bp)
TCTTGTTCTGGTCTGCTGGATCATC
LOC_Os03g51510
Os.7389.1.S1_at--94--4431Chr03:29415976..29416000 (25 bp)
GCCATGCTGGAACTGGAAGACCCAA
LOC_Os03g51510
Os.7389.1.S1_at--360--5811Chr03:29415994..29416018 (25 bp)
GACCCAATAATTCTCTTATGCAGTG
LOC_Os03g51510
Os.7389.1.S1_at--296--6131Chr03:29416067..29416091 (25 bp)
GAGGGACAAATCACCTTCCAAATTT
LOC_Os03g51510
Os.7389.1.S1_at--469--8531Chr03:29416096..29416120 (25 bp)
TGGACTGGCAACGTGTAAAACTTTC
LOC_Os03g51510
Os.7389.1.S1_at--1098--10711Chr03:29416128..29416152 (25 bp)
TTGCTGTTCTTTCCACTGTTCTGCT
LOC_Os03g51510
Os.7389.1.S1_at--218--9491Chr03:29416147..29416171 (25 bp)
TCTGCTCTGCTATCCTAGACATTGA
LOC_Os03g51510
Target Sequence 
AATCGGGTGCACAACTTTGCGGGCGCTGTTCGGAACTGTAAGCCTCCAGAGGTATACAAAGGGAAAGGCATATTGTACAT
TGATGAAGTTATCAAGCTGAAGCCAGGGAAGAAGCAAAAGAAGTAATGTAGGGATGAGCCTCCATATTTTACTTTCAGTC
TGCTAAGATGCTGTAGCACATTTTTAGTGGCGCATATGTTCTTGTGGTTTTCTTGTTCTGGTCTGCTGGATCATCTTTGC
CNCAGTGCCATGCTGGAACTGGAAGACCCAATAATTCTCTTATGCAGTGTATGTGAAATTGTGAATCATATGTTGAGCNT
GTATGACATACAGACCAGAGGGACAAATCACCTTCCAAATTTTTTTTGGACTGGCAACGTGTAAAACTTTCGATGGGTTT
GCTGTTCTTTCCACTGTTCTGCTCTGCTATCCTAGACATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis