Browse Element(s) Details


Os.31771.3.S1_at

Description gb:AK106785.1
DB_XREF= gi:32991994
TID=Os.31771.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H11, full insert sequence.
FL= gb:AK106785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5149010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51450NANA3+29383180..29383539hypothetical protein
LOC_Os03g51470Os.10468.1.S1_at11/113+29401687..29404169expressed protein
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51490Os.31771.3.S1_at10/113+29407570..29409263expressed protein
LOC_Os03g51510OsAffx.3576.1.S1_s_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510Os.7389.1.S1_at11/113+29413483..29416252Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520Os.25317.1.S1_at11/113+29418244..29428601Fip1 motif family protein, expressed
LOC_Os03g51530Os.54698.1.S1_at11/113+29429795..29430440expressed protein
LOC_Os03g51540Os.33892.2.S1_x_at10/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540Os.33892.1.S1_at8/113+29430880..29435426Lariat debranching enzyme, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31771.3.S1_at--936--4171Chr03:29408054..29408078 (25 bp)
CCCAGCCCATGTTGAGCAGCGAGGA
LOC_Os03g51490
Os.31771.3.S1_at--759--951Chr03:29408030..29408054 (25 bp)
AGGACGGCGTCGTGTATCTCATGGC
LOC_Os03g51490
Os.31771.3.S1_at--923--451Chr03:29408015..29408039 (25 bp)
ATCTCATGGCGGGTGATTTCTACGA
LOC_Os03g51490
Os.31771.3.S1_at--578--1451Chr03:29407982..29408006 (25 bp)
AGAAGCACAGGAGCCTGCACGTCTT
LOC_Os03g51490
Os.31771.3.S1_at--922--9011Chr03:29407967..29407991 (25 bp)
TGCACGTCTTCAGCGTTGACATGAC
LOC_Os03g51490
Os.31771.3.S1_at--450--5671Chr03:29407950..29407974 (25 bp)
GACATGACGACTTGCGAGTTTGTGT
LOC_Os03g51490
Os.31771.3.S1_at--1028--7691Chr03:29407875..29407899 (25 bp)
GGGTCTGATATATTCAAGCACCTCA
LOC_Os03g51490
Os.31771.3.S1_at--669--7951Chr03:29407846..29407870 (25 bp)
GGATAATCTCTGTCAGCTTGTTCCA
LOC_Os03g51490
Os.31771.3.S1_at--194--9671NONE
TCAGCTTGTTCCACCCAATATGAGG
NONE
Os.31771.3.S1_at--704--2971Chr03:29407764..29407788 (25 bp)
AATGTGATTACAGTTCGACCAAGGA
LOC_Os03g51490
Os.31771.3.S1_at--547--6451Chr03:29407627..29407651 (25 bp)
GATCAACAACGTTTTCCACGGAGAG
LOC_Os03g51490
Target Sequence 
CCCAGCCCATGTTGAGCAGCGAGGAGGACGGCGTCGTGTATCTCATGGCGGGTGATTTCTACGAGGAGGATGAGAAGCAC
AGGAGCCTGCACGTCTTCAGCGTTGACATGACGACTTGCGAGTTTGTGTCGGCTTGGCGCCTTCCTCCTTGGCGCCATTC
GGGTCCTCCATCCCTGATAGGGTCTGATATATTCAAGCACCTCAAGATGGATAATCTCTGTCAGCTTGTTCCACCCAATA
TGAGGGCCAAGGTGCTCCCTCGTCCACCAAAGAGGGATCGAGGTGAAGGCAATGTGATTACAGTTCGACCAAGGAAGGTG
CAACGAGTTCATCATCAAGGGGAAAATGTCTAAACTTTTTTAGGGAAAATGTCACCTAAATTTTCGTGTAAGCATCAATA
TTTTTTGTACATGTATGGCAAGATAAAGATCAACAACGTTTTCCACGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31771.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis