Browse Element(s) Details


Os.21762.2.S1_x_at

Description gb:BE040733
DB_XREF= gi:8336117
DB_XREF=OF05G09
TID=Os.21762.2
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21762 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for alpha-tubulin (clone OSTA-136)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g142208/11Tubulin alpha-3 chain, putative, expressed
LOC_Os03g516002/11Tubulin alpha-1 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14180Os.8096.1.S1_at11/1111+7927086..7931151expressed protein
LOC_Os11g14190Os.26629.1.S1_a_at11/1111+7933880..7935117expressed protein
LOC_Os11g14200NANA11+7941223..7942285hypothetical protein
LOC_Os11g14210NANA11+7954606..7954926hypothetical protein
LOC_Os11g14220Os.21762.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_x_at10/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.21762.2.S1_x_at8/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14230Os.17242.1.S1_at11/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14230Os.51919.1.S1_at1/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14240Os.57063.1.S1_at11/1111+7966149..7968131expressed protein
LOC_Os11g14250NANA11+7974089..7974517hypothetical protein
LOC_Os11g14260NANA11+7980481..7983082receptor-interacting serine-threonine kinase 4, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0045298cellular_componenttubulin
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21762.2.S1_x_at--983--8872Chr11:7957675..7957699 (25 bp)
TGAGGCCATCTATGACATCTGCCGC
LOC_Os11g14220
Os.21762.2.S1_x_at--856--2631Chr11:7957733..7957757 (25 bp)
AACCTCAACAGGCTTGTGTCCCAGG
LOC_Os11g14220
Os.21762.2.S1_x_at--147--4191Chr11:7957891..7957915 (25 bp)
CCCTGAGGTTCGATGGTGCTCTGAA
LOC_Os11g14220
Os.21762.2.S1_x_at--515--6251Chr11:7957902..7957926 (25 bp)
GATGGTGCTCTGAATGTGGATGTCA
LOC_Os11g14220
Os.21762.2.S1_x_at--1133--9951Chr11:7957953..7957977 (25 bp)
TACCCGAGGATCCACTTCATGCTTT
LOC_Os11g14220
Os.21762.2.S1_x_at--698--4491Chr11:7958001..7958025 (25 bp)
GCCGAGAAGGCCTACCACGAGCAGC
LOC_Os11g14220
Os.21762.2.S1_x_at--142--9291Chr11:7958028..7958052 (25 bp)
TCCGTGGCGGAGATCACCAACAGCG
LOC_Os11g14220
Os.21762.2.S1_x_at--783--7252Chr11:7958063..7958087 (25 bp)
GTCCTCCATGATGGCCAAGTGCGAC
LOC_Os11g14220
Os.21762.2.S1_x_at--382--1131NONE
AGTGCAGAGGCCCTGTCATGATCTC
NONE
Os.21762.2.S1_x_at--395--1991NONE
ACTCCACAGCGTCGGCAAGTGTTCT
NONE
Os.21762.2.S1_x_at--52--2871NONE
AAGTGTTCTCCCGATCGACTCAGTT
NONE
Target Sequence 
TGAGGCCATCTATGACATCTGCCGCCGCTCCCTCGACATTGAGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCC
AGGTCATCTCCTCACTGACTGCCTCCCTGAGGTTCGATGGTGCTCTGAATGTGGATGTCAACGAGTTCCAGACCAACCTG
GTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTACGCCCCGGTGATCTCGGCCGAGAAGGCCTACCACGAGCAGCT
CTCCGTGGCGGAGATCACCAACAGCGCCTTCGAGCCGTCCTCCATGATGGCCAAGTGCGACCCGCGCCACGGNAAGTACA
TGGCGTGCTGCCTGATGTACCGCGGCGACGTGGNCCCCNAAGGACGTGAANNCNNNNGGTGGNCACCATCAAGACGAAGC
GNNACCATCCAGTTCGTGGACTGGTGCCCCANGGGGNTNCAAGTGNNGCATCAACTACCAGCCCCCCAGCGGTCGCCCGG
GGGGAGACCTGGCCAAGTGCAGAGGCCCTGTCATGATCTCCACTCCACAGCGTCGGCAAGTGTTCTCCCGATCGACTCAG
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21762.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis