Browse Element(s) Details


Os.8096.1.S1_at

Description gb:AK061179.1
DB_XREF= gi:32971197
TID=Os.8096.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D03, full insert sequence.
FL= gb:AK102030.1 gb:AK061179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1418011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14170OsAffx.30971.1.S1_at10/1111+7904674..7912049Trypsin family protein, expressed
LOC_Os11g14180Os.8096.1.S1_at11/1111+7927086..7931151expressed protein
LOC_Os11g14190Os.26629.1.S1_a_at11/1111+7933880..7935117expressed protein
LOC_Os11g14200NANA11+7941223..7942285hypothetical protein
LOC_Os11g14210NANA11+7954606..7954926hypothetical protein
LOC_Os11g14220Os.21762.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_x_at10/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.21762.2.S1_x_at8/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8096.1.S1_at--517--3891Chr11:7930617..7930641 (25 bp)
CTGGTAGACTCGAGGGCCGGCAACT
LOC_Os11g14180
Os.8096.1.S1_at--881--1991Chr11:7930639..7930663 (25 bp)
ACTCGACAGGGCTAGCCAAGGCACA
LOC_Os11g14180
Os.8096.1.S1_at--832--2931Chr11:7930656..7930680 (25 bp)
AAGGCACAGAGCTCCTGGCCATCTT
LOC_Os11g14180
Os.8096.1.S1_at--632--9311Chr11:7930692..7930716 (25 bp)
TCCCGTGTTTCATGATCCAGACTTG
LOC_Os11g14180
Os.8096.1.S1_at--1091--5671Chr11:7930711..7930735 (25 bp)
GACTTGAAAGGTCAGCTTCCACATG
LOC_Os11g14180
Os.8096.1.S1_at--1037--10671Chr11:7930727..7930751 (25 bp)
TTCCACATGATCTGCATTGGTCGCT
LOC_Os11g14180
Os.8096.1.S1_at--722--651Chr11:7930776..7930800 (25 bp)
ATGCACCATCTTCAGTGTTTTCCAG
LOC_Os11g14180
Os.8096.1.S1_at--885--8251Chr11:7930842..7930866 (25 bp)
GGCACCTTGAGGTCTCTGAGAGCAT
LOC_Os11g14180
Os.8096.1.S1_at--855--1111Chr11:7930867..7930891 (25 bp)
AGTGACTGAAGAACTCTCCTGCTGG
LOC_Os11g14180
Os.8096.1.S1_at--657--9131Chr11:7930886..7930910 (25 bp)
TGCTGGCGCTGTTCGGAGAGTATAT
LOC_Os11g14180
Os.8096.1.S1_at--927--2971Chr11:7930925..7930949 (25 bp)
AATGGTGTGTACCTTCTTGTCGAGC
LOC_Os11g14180
Target Sequence 
CTGGTAGACTCGAGGGCCGGCAACTCGACAGGGCTAGCCAAGGCACAGAGCTCCTGGCCATCTTGGAGCACCACCTCCCG
TGTTTCATGATCCAGACTTGAAAGGTCAGCTTCCACATGATCTGCATTGGTCGCTGCAAGAAGCAAAGTAACAAGGGCAA
TGCACCATCTTCAGTGTTTTCCAGTGNTGTCATGTTCCTGCTTGGGGACAATCATCTGAAACGATGGCACCTTGAGGTCT
CTGAGAGCATAGTGACTGAAGAACTCTCCTGCTGGCGCTGTTCGGAGAGTATATAATTTTGGGGAGAAAATGGTGTGTAC
CTTCTTGTCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis