Browse Element(s) Details


Os.26629.1.S1_a_at

Description gb:AK060546.1
DB_XREF= gi:32970564
TID=Os.26629.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F08, full insert sequence.
FL= gb:AK060546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14170OsAffx.30971.1.S1_at10/1111+7904674..7912049Trypsin family protein, expressed
LOC_Os11g14180Os.8096.1.S1_at11/1111+7927086..7931151expressed protein
LOC_Os11g14190Os.26629.1.S1_a_at11/1111+7933880..7935117expressed protein
LOC_Os11g14200NANA11+7941223..7942285hypothetical protein
LOC_Os11g14210NANA11+7954606..7954926hypothetical protein
LOC_Os11g14220Os.21762.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_x_at10/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.21762.2.S1_x_at8/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14230Os.17242.1.S1_at11/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14230Os.51919.1.S1_at1/1111+7959903..7964507hemolysin A family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26629.1.S1_a_at--95--3311Chr11:7934425..7934449 (25 bp)
CACAAGAACTCTCATACACATCTCA
LOC_Os11g14190
Os.26629.1.S1_a_at--114--2191Chr11:7934410..7934434 (25 bp)
ACACATCTCAGTTCTTGGATTGCCA
LOC_Os11g14190
Os.26629.1.S1_a_at--989--10851Chr11:7934396..7934420 (25 bp)
TTGGATTGCCAACTGATCTAGACAA
LOC_Os11g14190
Os.26629.1.S1_a_at--940--9451Chr11:7934293..7934317 (25 bp)
TCTGATACCCAGACCAAACGGTTCA
LOC_Os11g14190
Os.26629.1.S1_a_at--957--2571Chr11:7934277..7934301 (25 bp)
AACGGTTCAAAGAGGCATCTGCAGC
LOC_Os11g14190
Os.26629.1.S1_a_at--854--7131Chr11:7934158..7934182 (25 bp)
GTCATTGCTCATACTTCCATTGGTG
LOC_Os11g14190
Os.26629.1.S1_a_at--36--571Chr11:7934076..7934100 (25 bp)
ATCCTGCTGGTTGTGCTGGCCTTCA
LOC_Os11g14190
Os.26629.1.S1_a_at--491--4451Chr11:7934058..7934082 (25 bp)
GCCTTCATGCCAACGGATGTGCGGA
LOC_Os11g14190
Os.26629.1.S1_a_at--985--2571Chr11:7934047..7934071 (25 bp)
AACGGATGTGCGGAGCATGGCTTCC
LOC_Os11g14190
Os.26629.1.S1_a_at--627--3491Chr11:7934032..7934056 (25 bp)
CATGGCTTCCTCTTACTTGTAAATA
LOC_Os11g14190
Os.26629.1.S1_a_at--250--7051Chr11:7933922..7933946 (25 bp)
GTAAAACATCACTTTCCAGACAGAT
LOC_Os11g14190
Target Sequence 
CACAAGAACTCTCATACACATCTCAGTTCTTGGATTGCCAACTGATCTAGACAAAATCACAGATCAAAACATCTAGCCGA
ATTTGGGGTTTGTTGCAATGGAAGGTGTAGGTGCTAGGCAGAGGAGGAACCCTCTGATACCCAGACCAAACGGTTCAAAG
AGGCATCTGCAGCATCAGCATCAGCCAAATGCTGCCGAGAAGAAGACCGCCGCGACATCGAATTACTTCAGTATCGAGGC
GTTCCTCGTGCTCGTCTTCCTCACCATGTCATTGCTCATACTTCCATTGGTGCTTCCCCCATTGCCTCCGCCGCCATCGC
TGCTGCTGCTGCTGCCAGTCTGCCTGCTCATCCTGCTGGTTGTGCTGGCCTTCATGCCAACGGATGTGCGGAGCATGGCT
TCCTCTTACTTGTAAATACATCTCCTAGGGGAATTTATTTTTGTTTTTGTTATTTTGGTTTTGGTTTTGTATTCGACATA
AGATGAGCGCGACGAAGCAAGCTGTAAAACATCACTTTCCAGACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26629.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis