Browse Element(s) Details


Os.51919.1.S1_at

Description gb:AK064278.1
DB_XREF= gi:32974296
TID=Os.51919.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F10, full insert sequence.
FL= gb:AK064278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g032901/11hypothetical protein
LOC_Os07g404341/11hypothetical protein
LOC_Os11g142301/11hemolysin A family protein, expressed
LOC_Os06g173801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03240Os.45173.1.S1_x_at6/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240Os.45173.5.S1_x_at4/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240OsAffx.20877.1.S1_at1/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03250Os.7393.1.S1_at1/1110+1356435..1360856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03260OsAffx.30252.1.S1_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30252.1.S1_x_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30257.1.S1_x_at1/1110+1365838..1366663hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_x_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270Os.55138.1.S1_x_at3/1110+1368468..1369723hypothetical protein
LOC_Os10g03280NANA10+1372953..1373334hypothetical protein
LOC_Os10g03290Os.53180.1.S1_at2/1110+1374961..1375977hypothetical protein
LOC_Os10g03290Os.51919.1.S1_at1/1110+1374961..1375977hypothetical protein
LOC_Os10g03300NANA10+1380080..1383629retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g03310Os.46610.1.A1_x_at1/1110+1385440..1387772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03320Os.15852.1.S1_at7/1110+1389876..1391363UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os10g03330OsAffx.10637.1.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.3.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.4.S1_s_at9/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.2.S1_at1/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_at11/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_x_at10/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51919.1.S1_at--758--98115Chr12:3911023..3911047 (25 bp)
TAACTCCTGCGGGAGCCCTCATGTT
NONE
Os.51919.1.S1_at--1026--10635Chr12:3911095..3911119 (25 bp)
TTCCCTATTTTCTGTGTGTTCATTG
NONE
Os.51919.1.S1_at--935--7412Chr12:3911110..3911134 (25 bp)
GTGTTCATTGTTTTGTTTTCGTCAA
NONE
Os.51919.1.S1_at--587--8831Chr12:3911180..3911204 (25 bp)
TGATTTGTGAATCAGCTTGGTTCTT
NONE
Os.51919.1.S1_at--509--2871Chr12:3911234..3911258 (25 bp)
AAGTGGTGCCACATTTCTTCTCCAG
NONE
Os.51919.1.S1_at--105--133Chr12:3911296..3911320 (25 bp)
ATTAAAACACATCTCTATCTCTACT
NONE
Os.51919.1.S1_at--390--10031Chr12:3911335..3911359 (25 bp)
TAGAGGTGCTTTCGTCGTCCGTAAA
NONE
Os.51919.1.S1_at--997--2411Chr12:3911412..3911436 (25 bp)
AAAACAGTCATCAGTGTCCATGAAA
NONE
Os.51919.1.S1_at--173--2411Chr12:3911468..3911492 (25 bp)
AAAAAGATGAGATGCGTCCGTGAAA
NONE
Os.51919.1.S1_at--716--2874Chr12:3911532..3911556 (25 bp)
AAGGGCGACAAAAAGATCCGATTCT
NONE
Os.51919.1.S1_at--801--551Chr12:3911547..3911571 (25 bp)
ATCCGATTCTATGCGTGCGGGAAAA
NONE
Target Sequence 
TAACTCCTGCGGGAGCCCTCATGTTTTTGTAAACATTCATGTTAATGAATCATGATTAATAAAATACAAGGTTTCCCTAT
TTTCTGTGTGTTCATTGTTTTGTTTTCGTCAAACACAGAATACCAAATTAACTTAAATTGATTTGCATGGGTTGATTTGA
TTTGTGAATCAGCTTGGTTCTTGCCGATGGGGGTGCACAGGTTGGAGAGGCAAGTGGTGCCACATTTCTTCTCCAGAGGA
AGTTTAATAATATAGCCAACTATTGCTTCAAAAATTAAAACACATCTCTATCTCTACTACTACTTAAAAAGTTAGAGGTG
CTTTCGTCGTCCGTAAAAATAAAATAAAGGGCGAAAAAATTGAATCTTTATATACGATGCGGTAAAAAAAACAGTCATCA
GTGTCCATGAAAAAAAAGATCCGATTAGTCCGTCCGTTAAAATAAAAAGATGAGATGCGTCCGTGAAAAGAAAAGATCCG
ATTAGTCAGTCCGTTAAAATAAAAGGAAAGGGCGACAAAAAGATCCGATTCTATGCGTGCGGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis