Browse Element(s) Details


OsAffx.30252.1.S1_x_at

Description tigr:9638.m00233
TID=OsAffx.30252.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0326011/11hypothetical protein
LOC_Os10g034801/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03220OsAffx.6563.1.S1_at11/1110+1341090..1343329transposase, putative, expressed
LOC_Os10g03230OsAffx.30251.1.S1_at11/1110+1343664..1344464hypothetical protein
LOC_Os10g03240Os.45173.1.S1_x_at6/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240Os.45173.5.S1_x_at4/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240OsAffx.20877.1.S1_at1/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03250Os.7393.1.S1_at1/1110+1356435..1360856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03260OsAffx.30252.1.S1_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30252.1.S1_x_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30257.1.S1_x_at1/1110+1365838..1366663hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_x_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270Os.55138.1.S1_x_at3/1110+1368468..1369723hypothetical protein
LOC_Os10g03280NANA10+1372953..1373334hypothetical protein
LOC_Os10g03290Os.53180.1.S1_at2/1110+1374961..1375977hypothetical protein
LOC_Os10g03290Os.51919.1.S1_at1/1110+1374961..1375977hypothetical protein
LOC_Os10g03300NANA10+1380080..1383629retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g03310Os.46610.1.A1_x_at1/1110+1385440..1387772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03320Os.15852.1.S1_at7/1110+1389876..1391363UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30252.1.S1_x_at--640--9091Chr10:1365871..1365895 (25 bp)
TGCTCTAACGACTACCCGCGAAGGT
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--992--9931Chr10:1365883..1365907 (25 bp)
TACCCGCGAAGGTCGCTGGAACCGG
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--699--7531Chr10:1365931..1365955 (25 bp)
GTGGCAGCGGAAGCTCACTGTTCTG
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--343--4691Chr10:1365937..1365961 (25 bp)
GCGGAAGCTCACTGTTCTGGACGAA
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--4--9691Chr10:1365945..1365969 (25 bp)
TCACTGTTCTGGACGAAGGCTGGGA
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--1020--5911Chr10:1365989..1366012 (24 bp)
GAGCATCTCCGCAACGGCGACAAGA
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--366--5611Chr10:1366438..1366458 (21 bp)
GACAAGAACCTCACCGGCGGGCGCT
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--830--1311Chr10:1366494..1366518 (25 bp)
AGATGGCCGACATGCATGCGAGACC
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--174--2111Chr10:1366503..1366527 (25 bp)
ACATGCATGCGAGACCGGCTCGAGG
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--443--4071Chr10:1366576..1366600 (25 bp)
CGAGGTCCTCGATCGCTGGGATGCT
LOC_Os10g03260
OsAffx.30252.1.S1_x_at--141--6392Chr10:1366586..1366610 (25 bp)
GATCGCTGGGATGCTGGCCTTCAAC
LOC_Os10g03260
Target Sequence 
TGCTCTAACGACTACCCGCGAAGGTCGCTGGAACCGGAGGCGCAGGAGGAGTCGCGTGCGGTGGCAGCGGAAGCTCACTG
TTCTGGACGAAGGCTGGGACGGTGTCGTGTTCAAGGCCGAGCATCTCCGCAACGGCGACAAGAACCTCACCGGCGGGCGC
TGTTCGACGACTCGTCGGACGAGACGATGTTGAAGGAGATGGCCGACATGCATGCGAGACCGGCTCGAGGCCACGGGGAC
GTGTTCGACGAGCGGCCGGAGCTGTCGCCGGCCGGGCGCGAGGTCCTCGATCGCTGGGATGCTGGCCTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30252.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis