Browse Element(s) Details


Os.57063.1.S1_at

Description gb:AK110848.1
DB_XREF= gi:32996057
TID=Os.57063.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.57063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C02, full insert sequence.
FL= gb:AK110848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1424011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14200NANA11+7941223..7942285hypothetical protein
LOC_Os11g14210NANA11+7954606..7954926hypothetical protein
LOC_Os11g14220Os.21762.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_x_at10/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.21762.2.S1_x_at8/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14230Os.17242.1.S1_at11/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14230Os.51919.1.S1_at1/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14240Os.57063.1.S1_at11/1111+7966149..7968131expressed protein
LOC_Os11g14250NANA11+7974089..7974517hypothetical protein
LOC_Os11g14260NANA11+7980481..7983082receptor-interacting serine-threonine kinase 4, putative
LOC_Os11g14270Os.14754.1.A1_s_at1/1111+7985564..7989894hAT family dimerisation domain containing protein
LOC_Os11g14280NANA11+7992269..7998628hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57063.1.S1_at--72--8011Chr11:7966529..7966553 (25 bp)
GGATGGGCCAGTTTTTCAAGGCAAT
LOC_Os11g14240
Os.57063.1.S1_at--439--671Chr11:7966506..7966530 (25 bp)
ATGAAGAGGCTTTGCGCGATACCGA
LOC_Os11g14240
Os.57063.1.S1_at--371--4151Chr11:7966492..7966516 (25 bp)
CGCGATACCGAGCTTCAGTCAGTCA
LOC_Os11g14240
Os.57063.1.S1_at--163--551Chr11:7966468..7966492 (25 bp)
ATCCCTTCTTGCCTGCAGGAATGTG
LOC_Os11g14240
Os.57063.1.S1_at--80--8671Chr11:7966447..7966471 (25 bp)
TGTGGCGACCAAACGGCTGCAGCAT
LOC_Os11g14240
Os.57063.1.S1_at--141--3411Chr11:7966428..7966452 (25 bp)
CAGCATGTGGCTTTGGATCGGTTGA
LOC_Os11g14240
Os.57063.1.S1_at--696--8931Chr11:7966367..7966391 (25 bp)
TGACAGTAAGCCTTCTTCAAACCCA
LOC_Os11g14240
Os.57063.1.S1_at--881--2371Chr11:7966349..7966373 (25 bp)
AAACCCAGTTTCAGTTGCAGAGTCA
LOC_Os11g14240
Os.57063.1.S1_at--96--2911Chr11:7966314..7966338 (25 bp)
AAGGATTCGAGCTCGTGTCGTCCGA
LOC_Os11g14240
Os.57063.1.S1_at--1160--9411Chr11:7966285..7966309 (25 bp)
TCGGATTGGACTCTCTTCTACAAGA
LOC_Os11g14240
Os.57063.1.S1_at--917--1911Chr11:7966161..7966185 (25 bp)
ACAGGAGTTTGTGTTTGCCTCCCGG
LOC_Os11g14240
Target Sequence 
GGATGGGCCAGTTTTTCAAGGCAATGAAGAGGCTTTGCGCGATACCGAGCTTCAGTCAGTCATCCCTTCTTGCCTGCAGG
AATGTGGCGACCAAACGGCTGCAGCATGTGGCTTTGGATCGGTTGAGTTCAGTTGTAGTGGTGGTGGTGGTGAAATGTGT
AATGACAGTAAGCCTTCTTCAAACCCAGTTTCAGTTGCAGAGTCAATGAGAGCAGAAGGATTCGAGCTCGTGTCGTCCGA
CGACTCGGATTGGACTCTCTTCTACAAGAATGGNTTGTTTGAGTCATGAGTTTGTCTGAATTGGAGTGGGGTTTCCCTGT
CCAGAGATGTTGTGTACTAATTGTAGCATGAGAAGAACCACTGCGAACACAGGAGTTTGTGTTTGCCTCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis