Browse Element(s) Details


OsAffx.25679.1.S1_at

Description tigr:9631.m05041
TID=OsAffx.25679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5159011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51562NANA3+29449881..29450079NA
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51590OsAffx.25679.1.S1_at11/113+29471317..29472768hypothetical protein
LOC_Os03g51600Os.12692.1.S1_x_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.12692.1.S1_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.21762.2.S1_x_at2/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25679.1.S1_at--483--9372Chr05:24548686..24548712 (23 bp)
TCGACGACGTTGACAGCTGCACGGG
NONE
OsAffx.25679.1.S1_at--480--8071Chr03:29471821..29471845 (25 bp)
GGAGCACCGGACCATGAGCTATGTC
LOC_Os03g51590
OsAffx.25679.1.S1_at--769--7771Chr03:29471763..29471787 (25 bp)
GGTCTCCACCCGGAGTTGAAGGTGT
LOC_Os03g51590
OsAffx.25679.1.S1_at--620--6691Chr03:29471647..29471671 (25 bp)
GTTGCCAGAGAACCTACCGATTCAT
LOC_Os03g51590
OsAffx.25679.1.S1_at--619--5171Chr03:29471605..29471629 (25 bp)
GCAAGATGGTGTCCTGTACCTGGTC
LOC_Os03g51590
OsAffx.25679.1.S1_at--1162--5491Chr03:29471511..29471535 (25 bp)
GAACAACGGTACTTGTTCGGCCTCG
LOC_Os03g51590
OsAffx.25679.1.S1_at--640--10611Chr03:29471496..29471520 (25 bp)
TTCGGCCTCGACGTGTGCAACAAGA
LOC_Os03g51590
OsAffx.25679.1.S1_at--41--1331Chr03:29471474..29471498 (25 bp)
AGAGGACCCTGTCATCGAGACATCT
LOC_Os03g51590
OsAffx.25679.1.S1_at--700--2131Chr03:29471444..29471468 (25 bp)
ACAGTGGCTATCTCTTGGGTTTCGA
LOC_Os03g51590
OsAffx.25679.1.S1_at--845--7671Chr03:29471428..29471452 (25 bp)
GGGTTTCGACATGTTCAGGTGCCTC
LOC_Os03g51590
OsAffx.25679.1.S1_at--995--9171Chr03:29471380..29471404 (25 bp)
TGCCGCTCCGAGCACTGATGAGAAT
LOC_Os03g51590
Target Sequence 
TCGACGACGTTGACAGCTGCACGGGGAGGGGGAACCCGGCGGAGCACCGGACCATGAGCTATGTCGGGGACTCCATCAAG
TTCGTGTCCATCGGCGACGGTCTCCACCCGGAGTTGAAGGTGTGGGCTCTGTTGCCAGCCACTATGGAGTGGAAGAAACT
CCACGAGCTGAGCATGGCGACGTTGTGGGGGTTGGAGGGCTTCAAGAACGCTGGGTTGCCAGAGAACCTACCGATTCATC
CCATCCTGAGCACGCAGCAAGATGGTGTCCTGTACCTGGTCTTGCCGGCTGAGGAGAAGGTGGAGGAAGACATCGTTGTC
GCCGTCGAGGAGGAGGATGTGGCGGTAACTGAACAACGGTACTTGTTCGGCCTCGACGTGTGCAACAAGAGGACCCTGTC
ATCGAGACATCTCCCGGACAGTGGCTATCTCTTGGGTTTCGACATGTTCAGGTGCCTCGACGAGCGTTGCCTCTGTCCTC
ATGCCGCTCCGAGCACTGATGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis