Browse Element(s) Details


Os.15197.1.S1_at

Description gb:AK067068.1
DB_XREF= gi:32977086
TID=Os.15197.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093C21, full insert sequence.
FL= gb:AK067068.1 gb:AK110903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5161011/11inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51570OsAffx.3577.1.S1_at11/113+29462895..29465992hypothetical protein
LOC_Os03g51580Os.7441.1.S1_at11/113+29467207..29469644Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51590OsAffx.25679.1.S1_at11/113+29471317..29472768hypothetical protein
LOC_Os03g51600Os.12692.1.S1_x_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.12692.1.S1_at11/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51600Os.21762.2.S1_x_at2/113+29476676..29479679Tubulin alpha-1 chain, putative, expressed
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed
LOC_Os03g51640Os.9036.1.S1_at10/113+29507217..29510153expressed protein
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15197.1.S1_at--104--10651Chr03:29491491..29491515 (25 bp)
TTCGCTTCCCAACGTTGATGTAGGT
LOC_Os03g51610
Os.15197.1.S1_at--481--2891Chr03:29491551..29491575 (25 bp)
AAGGGTCTCTTGTGCTTCAGCCAAC
LOC_Os03g51610
Os.15197.1.S1_at--931--1591Chr03:29491755..29491857 (25 bp)
AGCTGCGCCGACGATTGGGTCTTAG
LOC_Os03g51610
Os.15197.1.S1_at--436--3231Chr03:29491893..29491917 (25 bp)
CAAGAGATCGGTTCTATGTCATAGA
LOC_Os03g51610
Os.15197.1.S1_at--275--1411Chr03:29491915..29491935 (21 bp)
AGACATGAACTATTTTCCTGGGTAT
LOC_Os03g51610
Os.15197.1.S1_at--321--751Chr03:29492365..29492389 (25 bp)
ATGTATTCACCGACTTTCTGCTGAG
LOC_Os03g51610
Os.15197.1.S1_at--870--1771Chr03:29492460..29492484 (25 bp)
ACCGTGTCAGTGTGTCTCGAATTCG
LOC_Os03g51610
Os.15197.1.S1_at--627--3791Chr03:29492475..29492499 (25 bp)
CTCGAATTCGCTGTGTGTGTAGTAC
LOC_Os03g51610
Os.15197.1.S1_at--1114--9251Chr03:29492529..29492553 (25 bp)
TCCTCCGTGGTAAAGTTGGGCATCA
LOC_Os03g51610
Os.15197.1.S1_at--997--4731Chr03:29492587..29492611 (25 bp)
GCTGTAAATTATTAGCTCCCGTTTG
LOC_Os03g51610
Os.15197.1.S1_at--556--9291Chr03:29492603..29492627 (25 bp)
TCCCGTTTGCTAACTTCTCTTGTTC
LOC_Os03g51610
Target Sequence 
TTCGCTTCCCAACGTTGATGTAGGTGATTTATCAAACAATGCTGGAGTATTTCGGTTTCCAAGGGTCTCTTGTGCTTCAG
CCAACGCAGATGANGCAGATCTGGACCCCCATGTTGCTGAACTTCCTCCAAGACCACTTCTCGAGATATNTGGCAAGAGA
GCTGCGCCGACGATTGGGTCTTAGATTGTTTAACATTGATATGATTAGAGAGCATGGGACAAGAGATCGGTTCTATGTCA
TAGACATGAACTATTTTCCTGGGTATGGTAAAATGCCTGGATATGAACATGTATTCACCGACTTTCTGCTGAGTCTAGTT
CAAAAGGAGTACAAACGNCGACCAAGCTATAGCTCATGCGAGGGGTGAAACGACGAGCCCTTCACCGTGTCAGTGTGTCT
CGAATTCGCTGTGTGTGTAGTACAAATGTGAATGCAAGAAGGCAAGAGCAAATCCTCCGTGGTAAAGTTGGGCATCAGTA
GTTGCGATAAAGCAGCGATGACTGTGTCAAGCTGTAAATTATTAGCTCCCGTTTGCTAACTTCTCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis