Browse Element(s) Details


Os.9036.1.S1_at

Description gb:AK068759.1
DB_XREF= gi:32978784
TID=Os.9036.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158A20, full insert sequence.
FL= gb:AK068759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5164010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51610Os.15197.1.S2_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51610Os.15197.1.S1_at11/113+29486534..29493834inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g51620Os.53363.1.S1_at11/113+29494392..29500681early-responsive to dehydration protein, putative, expressed
LOC_Os03g51640Os.9036.1.S1_at10/113+29507217..29510153expressed protein
LOC_Os03g51650Os.11802.1.S1_at11/113+29511103..29516407expressed protein
LOC_Os03g51660OsAffx.25680.1.S1_at10/113+29533678..29535394hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9036.1.S1_at--1079--5931Chr03:29509569..29509593 (25 bp)
GAGCAGCAAGCAAATTCAACGGATG
LOC_Os03g51640
Os.9036.1.S1_at--1020--9691Chr03:29509680..29509704 (25 bp)
TCAACTGATGCTGAAAATGCCACTT
LOC_Os03g51640
Os.9036.1.S1_at--45--8451Chr03:29509716..29509740 (25 bp)
GGCCATGATGGTAATACCGGAACCA
LOC_Os03g51640
Os.9036.1.S1_at--249--6511Chr03:29509998..29510022 (25 bp)
GATATGCTATGTATTGCCTAGCACA
LOC_Os03g51640
Os.9036.1.S1_at--573--4451Chr03:29510013..29510037 (25 bp)
GCCTAGCACATCATGCTCTGGGTTG
LOC_Os03g51640
Os.9036.1.S1_at--171--3531Chr03:29510024..29510048 (25 bp)
CATGCTCTGGGTTGAGTGATGCGCA
LOC_Os03g51640
Os.9036.1.S1_at--450--6111Chr03:29510037..29510061 (25 bp)
GAGTGATGCGCAAAAGGGCTTGTTA
LOC_Os03g51640
Os.9036.1.S1_at--947--231Chr03:29510070..29510094 (25 bp)
ATATATAGCCATTCAGCAGCTCTGA
LOC_Os03g51640
Os.9036.1.S1_at--791--3391Chr03:29510086..29510110 (25 bp)
CAGCTCTGAAGCTTTGCTGCTGCAA
LOC_Os03g51640
Os.9036.1.S1_at--1141--7131Chr03:29510125..29510149 (25 bp)
GTCTATAGTTCTGTGCTTTATGTCT
LOC_Os03g51640
Os.9036.1.S1_at--5--10111Chr03:29510143..29510167 (25 bp)
TATGTCTACAACTTTTTTCTTGTGA
NONE
Target Sequence 
GAGCAGCAAGCAAATTCAACGGATGTGTTGAACAACCAGATAAAACTNTTCATTGACCTCACATCAGCTGNTGAGTTGAA
TTATNGACCAAATGGGACCCTGGNTTNGGCTTCAACTGATGCTGAAAATGCCACTTNTGTAGATAGAGGCCATGATGGTA
ATACCGGAACCAATAAGGNTGAGGAAGGAGATNCAGGCAAAGACTTAGATTTNTNGNCAAAAATCATGAACAAGGCCATT
AGTGAAGATGAAGTTGTTNTTGAATGATAAGGAGATNTNTCAGGTTAGNTTNTGGNGTAACCTGTAAGTNTGTAGGNACC
TTAAGAGAAGGNGAAGAAACTAGTNTTNTNTTTNTCAGTAGNCTTGGAGATGCAATACAAGTAAACTATNTNTATTGCCC
CCCCCCCCCCTTTTGTATAAATTTGATAGAGATATGCTATGTATTGCCTAGCACATCATGCTCTGGGTTGAGTGATGCGC
AAAAGGGCTTGTTATGGAAGTAATATATAGCCATTCAGCAGCTCTGAAGCTTTGCTGCTGCAATGNTATTTCAACTTGTC
TATAGTTCTGTGCTTTATGTCTACAACTTTTTTCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis