Browse Element(s) Details


Os.48811.1.S1_at

Description gb:AK109453.1
DB_XREF= gi:32994662
TID=Os.48811.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E11, full insert sequence.
FL= gb:AK109453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5176011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51740Os.53146.1.S1_at11/113+29611223..296134831-aminocyclopropane-1-carboxylate synthase 1, putative, expressed
LOC_Os03g51750OsAffx.13460.1.S1_at11/113+29627171..29627659hypothetical protein
LOC_Os03g51760Os.48811.1.S1_at11/113+29635994..29637557F-box domain containing protein, expressed
LOC_Os03g51770NANA3+29639540..29642980retrotransposon protein, putative, unclassified
LOC_Os03g51780NANA3+29643608..29649739retrotransposon protein, putative, unclassified
LOC_Os03g51790Os.11933.1.S1_at11/113+29655593..29657752expressed protein
LOC_Os03g51800OsAffx.20729.1.S1_x_at1/113+29658677..29661637retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22927.1.S1_x_at2/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22927.2.S1_x_at1/113+29662447..29666067retrotransposon protein, putative, unclassified
LOC_Os03g51810OsAffx.22063.1.S1_at1/113+29662447..29666067retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48811.1.S1_at--812--8171Chr03:29636970..29636994 (25 bp)
GGAACCACTGGATCGGCAAGACACA
LOC_Os03g51760
Os.48811.1.S1_at--808--3971Chr03:29637023..29637047 (25 bp)
CGGGAGCAGCTCGTTCTTGCGAAGT
LOC_Os03g51760
Os.48811.1.S1_at--712--10531Chr03:29637036..29637060 (25 bp)
TTCTTGCGAAGTGGGTTCTCGAGTC
LOC_Os03g51760
Os.48811.1.S1_at--572--2691Chr03:29637143..29637167 (25 bp)
AAGCTCTCGGCGAAAATCTCGGACC
LOC_Os03g51760
Os.48811.1.S1_at--984--3391Chr03:29637167..29637191 (25 bp)
CAGCTGCGCGGCTGCAAGCTCGTGA
LOC_Os03g51760
Os.48811.1.S1_at--202--1591Chr03:29637183..29637207 (25 bp)
AGCTCGTGAGCTTCGGTGGATTCTG
LOC_Os03g51760
Os.48811.1.S1_at--1014--6711Chr03:29637226..29637250 (25 bp)
GTTCTTCGTCATGGCCGACTGGGTC
LOC_Os03g51760
Os.48811.1.S1_at--914--7991Chr03:29637285..29637309 (25 bp)
GGATGTGGCGCAACACCGATGAGTC
LOC_Os03g51760
Os.48811.1.S1_at--1070--2471Chr03:29637296..29637320 (25 bp)
AACACCGATGAGTCGAGGCCGCTCG
LOC_Os03g51760
Os.48811.1.S1_at--272--5791Chr03:29637406..29637430 (25 bp)
GACGAAATGGCAGGCTACTTGAATT
LOC_Os03g51760
Os.48811.1.S1_at--181--10291Chr03:29637442..29637466 (25 bp)
TTTGCTGTAGGCCTGTAGCGATGAA
LOC_Os03g51760
Target Sequence 
GGAACCACTGGATCGGCAAGACACACGACGGCCGTCTCTGCTTCTTCGCNCTGCGGGAGCAGCTCGTTCTTGCGAAGTGG
GTTCTCGAGTCGCCGGGGAAATGNNNNNNGNNGCCGGCGGTGGACCTGCGCGCGCTGATGAACCCGGCNACCGTCGGTGA
CCTCTCCCGAATCAAGCTCTCGGCGAAAATCTCGGACCAGCTGCGCGGCTGCAAGCTCGTGAGCTTCGGTGGATTCTGCG
AGGGCACCGGCGCGCTGTTCTTCGTCATGGCCGACTGGGTCGTATCCCTCGACCTCGCGACGTGGAGGTTTGAGAGGATG
TGGCGCAACACCGATGAGTCGAGGCCGCTCGGCGACATCTTCCCCGTCGAGATNATGGTTTGGCCACCGGTGCGCCGCGG
CGATCTTGGCGAGAAGGAATGAGGTGCAAGGTGTTCGACGAAATGGCAGGCTACTTGAATTGAAGGTGTTTNTTTGCTGT
AGGCCTGTAGCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis