Browse Element(s) Details


OsAffx.22927.2.S1_x_at

Description gb:NM_189308.1
DB_XREF= gi:34905699
GEN=P0552C05.20
TID=OsAffx.22927.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0552C05.20 (P0552C05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2004011/11retrotransposon protein, putative, unclassified
LOC_Os09g398301/11retrotransposon protein, putative, unclassified
LOC_Os04g194201/11retrotransposon protein, putative, unclassified
LOC_Os03g518101/11retrotransposon protein, putative, unclassified
LOC_Os10g102001/11retrotransposon protein, putative, unclassified
LOC_Os08g232401/11retrotransposon protein, putative, unclassified
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
LOC_Os04g042701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19980OsAffx.11125.1.S1_at11/111+11354930..11356720hypothetical protein
LOC_Os01g19990Os.28809.1.S1_at11/111+11361133..11362122expressed protein
LOC_Os01g20000Os.34436.1.S1_at1/111+11363794..11364042hypothetical protein
LOC_Os01g20010NANA1+11366371..11366637hypothetical protein
LOC_Os01g20020OsAffx.11126.1.S1_at9/111+11369571..11371214hypothetical protein
LOC_Os01g20030NANA1+11375766..11376503expressed protein
LOC_Os01g20040OsAffx.22927.2.S1_x_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20040OsAffx.22927.2.S1_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.53142.1.S1_at3/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.23706.1.A1_x_at1/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20060NANA1+11386231..11386698hypothetical protein
LOC_Os01g20070NANA1+11388213..11388554retrotransposon protein, putative, unclassified
LOC_Os01g20080NANA1+11395692..11397810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g20090Os.46306.1.S1_x_at8/111+11401036..11404368transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22927.2.S1_x_at--357--10751Chr01:11380340..11380364 (25 bp)
TTGAGAGCCATCTCCGCAAGAAGTG
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--887--8171Chr01:11380374..11380460 (25 bp)
GGAAGAAGGATTGCGATCCGCCTCG
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--530--2911Chr01:11380379..11380465 (25 bp)
AAGGATTGCGATCCGCCTCGTGGTT
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--461--4471Chr01:11380519..11380543 (25 bp)
GCCTGCGAAACAAGGGCCTAACGGG
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--617--4051Chr01:11380546..11380570 (25 bp)
CGATGGTGTTTGACGACTACTTCCG
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--58--8651Chr01:11380611..11380635 (25 bp)
TGGGAGTACACCGAGCACAACGATC
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--685--1831Chr01:11380681..11380705 (25 bp)
ACGCAAAGACAGTGATCCGACGGGT
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--231--7712Chr05:1554999..1555022 (24 bp)
GGGTCTGGACACTGCCGAGCAAACG
LOC_Os05g03650
OsAffx.22927.2.S1_x_at--495--5951Chr01:11380725..11380749 (25 bp)
GAGCAAACGCTGATCCTGGACGGGA
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--211--2371Chr01:11380729..11380753 (25 bp)
AAACGCTGATCCTGGACGGGATCCT
LOC_Os01g20040
OsAffx.22927.2.S1_x_at--1157--6078Chr10:5381010..5381078 (25 bp)
GAGTATCCTGGCTGTGATGTCGGCC
LOC_Os10g10200
Target Sequence 
TTGAGAGCCATCTCCGCAAGAAGTGGGAGAGATTGGAAGAAGGATTGCGATCCGCCTCGTGGTTGGCGGTTTCGGAGCTG
GGCGAGGAGTACGATGCAGTGCGGGACCGCCTCAGGGGCCTGCGAAACAAGGGCCTAACGGGGGCGATGGTGTTTGACGA
CTACTTCCGCCGCTGCATCGCGCCTCTCCAGGAGCGGTCCCGTGGCGCGTGGGAGTACACCGAGCACAACGATCCCATGC
GCACCCACGTGGGTGAGCGCTGGGACTGGGGCGAGGAGGACGCAAAGACAGTGATCCGACGGGTGCTGGGTCTGGACACT
GCCGAGCAAACGCTGATCCTGGACGGGATCCTCCCCCTCTGCAGCGACCGCGACCGGGAGAGTATCCTGGCTGTGATGTC
GGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22927.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis