Browse Element(s) Details


Os.28809.1.S1_at

Description gb:AK111041.1
DB_XREF= gi:32996250
TID=Os.28809.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0552C05.16 (P0552C05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B04, full insert sequence.
FL= gb:AK111041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1999011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19970OsAffx.21941.1.S1_s_at11/111+11347388..11353401Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g19980OsAffx.11125.1.S1_at11/111+11354930..11356720hypothetical protein
LOC_Os01g19990Os.28809.1.S1_at11/111+11361133..11362122expressed protein
LOC_Os01g20000Os.34436.1.S1_at1/111+11363794..11364042hypothetical protein
LOC_Os01g20010NANA1+11366371..11366637hypothetical protein
LOC_Os01g20020OsAffx.11126.1.S1_at9/111+11369571..11371214hypothetical protein
LOC_Os01g20030NANA1+11375766..11376503expressed protein
LOC_Os01g20040OsAffx.22927.2.S1_x_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20040OsAffx.22927.2.S1_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.53142.1.S1_at3/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.23706.1.A1_x_at1/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20060NANA1+11386231..11386698hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28809.1.S1_at--715--9031Chr01:11361709..11361733 (25 bp)
TGCACGGCAGCAAGAGGCACGCTCG
LOC_Os01g19990
Os.28809.1.S1_at--642--8451Chr01:11361532..11361556 (25 bp)
TGGCCGAACATTGCCGGAGAGTTTT
LOC_Os01g19990
Os.28809.1.S1_at--190--1351Chr01:11361515..11361539 (25 bp)
AGAGTTTTCGGCCAGCTGAACATCG
LOC_Os01g19990
Os.28809.1.S1_at--639--7171Chr01:11361440..11361464 (25 bp)
GTCTGCACCGATCGAACCGAAGCAA
LOC_Os01g19990
Os.28809.1.S1_at--1126--4091Chr01:11361423..11361447 (25 bp)
CGAAGCAAGCAACGCTGCAGCTGCA
LOC_Os01g19990
Os.28809.1.S1_at--996--5131Chr01:11361306..11361330 (25 bp)
GCAAACTCTGCAACTCTAGGTGGTG
LOC_Os01g19990
Os.28809.1.S1_at--405--2691Chr01:11361276..11361300 (25 bp)
AAGCTGCACGGTGATGGTCTCACCT
LOC_Os01g19990
Os.28809.1.S1_at--738--6251Chr01:11361264..11361288 (25 bp)
GATGGTCTCACCTGTTTAGTGATTA
LOC_Os01g19990
Os.28809.1.S1_at--1101--9911Chr01:11361240..11361265 (25 bp)
TACTGATTTCTGCATCTACGCTACT
LOC_Os01g19990
Os.28809.1.S1_at--871--9911Chr01:11361219..11361243 (25 bp)
TACTCCACTGTCCATTGATTACTGA
LOC_Os01g19990
Os.28809.1.S1_at--415--7011Chr01:11361144..11361168 (25 bp)
GTACTAGTATAACATGTTGCCACAA
LOC_Os01g19990
Target Sequence 
TGCACGGCAGCAAGAGGCACGCTCGGGATGCGCCCGTGGCGGCGAGGCGGCACGAGGACTCGACGCCGGCGAGCCGCCGC
CGCATGATCAGCTTGCCGCCGGTCAGCTACGGCAGCGCATGGGGTGGTAAGAGGAAATGCGCCGGCCAGGACGAGCCGTC
CCGGCAAGACCGGCCGGTGGCCGAACATTGCCGGAGAGTTTTCGGCCAGCTGAACATCGGCGAAGGCGGCGAATTCTCTC
GCCGGAGCTCCACCGAGAGCCGCGGCTCGGTCTGCACCGATCGAACCGAAGCAAGCAACGCTGCAGCTGCAGAAACGGAG
ACCAGTGTTGGTCAGAGGAGGATGAGTAGGAGGAGGAGCAGGAAGAACGTGAGGAAGATGGAATCAACCAAGTCCAAGAA
GCAGCAAACTCTGCAACTCTAGGTGGTGGCGTGAAGCTGCACGGTGATGGTCTCACCTGTTTAGTGATTACTGATTTCTG
CATCTACGCTACTCCACTGTCCATTGATTACTGACTAGTACTAGACTGAACTAGCTATGGATGATTAGACATGTACCTAA
TGCAGTACTAGTATAACATGTTGCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis