Browse Element(s) Details


OsAffx.11126.1.S1_at

Description tigr:9629.m01957
TID=OsAffx.11126.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g200209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19970OsAffx.21941.1.S1_s_at11/111+11347388..11353401Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g19980OsAffx.11125.1.S1_at11/111+11354930..11356720hypothetical protein
LOC_Os01g19990Os.28809.1.S1_at11/111+11361133..11362122expressed protein
LOC_Os01g20000Os.34436.1.S1_at1/111+11363794..11364042hypothetical protein
LOC_Os01g20010NANA1+11366371..11366637hypothetical protein
LOC_Os01g20020OsAffx.11126.1.S1_at9/111+11369571..11371214hypothetical protein
LOC_Os01g20030NANA1+11375766..11376503expressed protein
LOC_Os01g20040OsAffx.22927.2.S1_x_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20040OsAffx.22927.2.S1_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.53142.1.S1_at3/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20050Os.23706.1.A1_x_at1/111+11382848..11384432retrotransposon protein, putative, unclassified
LOC_Os01g20060NANA1+11386231..11386698hypothetical protein
LOC_Os01g20070NANA1+11388213..11388554retrotransposon protein, putative, unclassified
LOC_Os01g20080NANA1+11395692..11397810transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11126.1.S1_at--211--1831Chr01:11369556..11369580 (25 bp)
ACGCCGAGCAGCTCGATGGCGAGCT
NONE
OsAffx.11126.1.S1_at--967--9211Chr01:11369580..11369604 (25 bp)
TCCATGACGGCCACCACATTAGAGA
LOC_Os01g20020
OsAffx.11126.1.S1_at--961--671Chr01:11369583..11369607 (25 bp)
ATGACGGCCACCACATTAGAGACCA
LOC_Os01g20020
OsAffx.11126.1.S1_at--302--2071Chr01:11369595..11369619 (25 bp)
ACATTAGAGACCACCTTGGCCTACT
LOC_Os01g20020
OsAffx.11126.1.S1_at--878--1351Chr01:11369600..11369624 (25 bp)
AGAGACCACCTTGGCCTACTCTATT
LOC_Os01g20020
OsAffx.11126.1.S1_at--1028--8411Chr01:11369612..11369636 (25 bp)
GGCCTACTCTATTACGGCCACGGTG
LOC_Os01g20020
OsAffx.11126.1.S1_at--980--131Chr01:11369622..11369646 (25 bp)
ATTACGGCCACGGTGCTACAGCGGG
LOC_Os01g20020
OsAffx.11126.1.S1_at--456--4471Chr01:11370630..11370654 (25 bp)
GCCGAGAAGTAATTTTCACAAACAC
LOC_Os01g20020
OsAffx.11126.1.S1_at--1116--3091NONE
AATTTTCACAAACACAACTCCACAC
NONE
OsAffx.11126.1.S1_at--254--2191Chr01:11370651..11371168 (25 bp)
ACACAACTCCACACAAGGACATAGC
LOC_Os01g20020
OsAffx.11126.1.S1_at--802--8131Chr01:11371160..11371184 (25 bp)
GGACATAGCATTATTCGCTTATCCT
LOC_Os01g20020
Target Sequence 
ACGCCGAGCAGCTCGATGGCGAGCTCCATGACGGCCACCACATTAGAGACCACCTTGGCCTACTCTATTACGGCCACGGT
GCTACAGCGGGGCTGGAAAATGCTGAGGAGGGAGGAGAGGGAAACGATGATAAGNNTNNNAGGGACTNGCCGAGAAGTAA
TTTTCACAAACACAACTCCACACAAGGACATAGCATTATTCGCTTATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis