Browse Element(s) Details


OsAffx.11125.1.S1_at

Description tigr:9629.m01953
TID=OsAffx.11125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1998011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19960Os.46306.1.S1_x_at6/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_at5/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_x_at3/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19970OsAffx.21941.1.S1_s_at11/111+11347388..11353401Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g19980OsAffx.11125.1.S1_at11/111+11354930..11356720hypothetical protein
LOC_Os01g19990Os.28809.1.S1_at11/111+11361133..11362122expressed protein
LOC_Os01g20000Os.34436.1.S1_at1/111+11363794..11364042hypothetical protein
LOC_Os01g20010NANA1+11366371..11366637hypothetical protein
LOC_Os01g20020OsAffx.11126.1.S1_at9/111+11369571..11371214hypothetical protein
LOC_Os01g20030NANA1+11375766..11376503expressed protein
LOC_Os01g20040OsAffx.22927.2.S1_x_at11/111+11379923..11380943retrotransposon protein, putative, unclassified
LOC_Os01g20040OsAffx.22927.2.S1_at11/111+11379923..11380943retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11125.1.S1_at--483--6191Chr01:11354981..11355293 (25 bp)
GAGGCCATAGGAAAATTCTCCGAAA
LOC_Os01g19980
OsAffx.11125.1.S1_at--675--2452Chr01:11355313..11355337 (25 bp)
AAAATTGATTTTGCTCTCTGGTGAT
LOC_Os01g19980
OsAffx.11125.1.S1_at--1007--3871Chr01:11355330..11355354 (25 bp)
CTGGTGATTTTCAGAATTCTCCAAA
LOC_Os01g19980
OsAffx.11125.1.S1_at--713--10571Chr01:11356507..11356531 (25 bp)
TTCTTTGAAGAGTGGAGATCCTCCT
LOC_Os01g19980
OsAffx.11125.1.S1_at--531--6031Chr01:11356521..11356545 (25 bp)
GAGATCCTCCTTGGCATCCAAAGAG
LOC_Os01g19980
OsAffx.11125.1.S1_at--596--3292Chr01:11356539..11356563 (25 bp)
CAAAGAGCACATTTCTTCTCCTCAT
LOC_Os01g19980
OsAffx.11125.1.S1_at--525--591Chr01:11356562..11356586 (25 bp)
ATGCCATCTGTCCATTTGGATGACG
LOC_Os01g19980
OsAffx.11125.1.S1_at--198--4491Chr01:11356595..11356619 (25 bp)
GCCGGAACCGGTAGAAACCATCATT
LOC_Os01g19980
OsAffx.11125.1.S1_at--322--3551Chr01:11356613..11356637 (25 bp)
CATCATTGGGAAGCGGTTACTACCG
LOC_Os01g19980
OsAffx.11125.1.S1_at--433--2032Chr07:9045806..9045825 (20 bp)
TACTACCGAACGCAACCTGGGCCTA
NONE
OsAffx.11125.1.S1_at--936--10091Chr01:11356653..11356677 (25 bp)
TAGGCCAGCAGCTTCTGGGTTGGAA
LOC_Os01g19980
Target Sequence 
GAGGCCATAGGAAAATTCTCCGAAAATGGTTTTCAGAGTTCCCGAAAATTGATTTTGCTCTCTGGTGATTTTCAGAATTC
TCCAAAAATGGTTTTCGGAATTTCCGAAATGGTGGAGATTTCTTTGAAGAGTGGAGATCCTCCTTGGCATCCAAAGAGCA
CATTTCTTCTCCTCATGCCATCTGTCCATTTGGATGACGGTTGGAGCGCCGGAACCGGTAGAAACCATCATTGGGAAGCG
GTTACTACCGAACGCAACCTGGGCCTAGGCCAGCAGCTTCTGGGTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis