Browse Element(s) Details


OsAffx.22063.1.S1_at

Description gb:NM_188687.1
DB_XREF= gi:34904457
GEN=OSJNBa0086P08.8
TID=OsAffx.22063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0086P08.8 (OSJNBa0086P08.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1363011/11retrotransposon protein, putative, unclassified
LOC_Os09g010301/11retrotransposon protein, putative, unclassified
LOC_Os07g494401/11retrotransposon protein, putative, unclassified
LOC_Os06g111001/11retrotransposon protein, putative, unclassified
LOC_Os03g518101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13610Os.23151.1.S1_at11/111+7615884..7621338NmrA-like family protein, expressed
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22063.1.S1_at--758--7631Chr01:7638818..7638842 (25 bp)
GGGAGATTGCAGCTCTCTGCCTTAC
LOC_Os01g13630
OsAffx.22063.1.S1_at--760--3391Chr01:7638809..7638833 (25 bp)
CAGCTCTCTGCCTTACTAACAAGAT
LOC_Os01g13630
OsAffx.22063.1.S1_at--1084--3651Chr01:7638798..7638822 (25 bp)
CTTACTAACAAGATTGGACCTGGCC
LOC_Os01g13630
OsAffx.22063.1.S1_at--550--6932Chr06:5819422..5819442 (21 bp)
GTAGGCATTTCCGTGCGCCGGGATA
LOC_Os06g11100
OsAffx.22063.1.S1_at--265--9292Chr07:29604553..29604577 (25 bp)
TCCGTGCGCCGGGATAGGAAGCTCC
LOC_Os07g49440
OsAffx.22063.1.S1_at--49--9351Chr01:7638677..7638701 (25 bp)
TCGCGCTCCGGCTAGATGGTCTGGC
LOC_Os01g13630
OsAffx.22063.1.S1_at--768--8992Chr03:29662799..29662823 (25 bp)
TGAAGTCGTTGTCGGCTTCTTTGGC
LOC_Os03g51810
OsAffx.22063.1.S1_at--223--4732Chr09:70355..70379 (25 bp)
GCTGGTCCTCGCGAGTCATCAAGCT
LOC_Os09g01030
OsAffx.22063.1.S1_at--890--8651Chr01:7638527..7638551 (25 bp)
TGTGGCGTGCGCTTGAGGACTTCCC
LOC_Os01g13630
OsAffx.22063.1.S1_at--622--3851Chr01:7638458..7638482 (25 bp)
CTGACGCGATCGTCTCCAGTTTCGA
LOC_Os01g13630
OsAffx.22063.1.S1_at--974--3051Chr01:7638414..7638438 (25 bp)
AATCTCACGCTTGCCTCAGACGAGG
LOC_Os01g13630
Target Sequence 
GGGAGATTGCAGCTCTCTGCCTTACTAACAAGATTGGACCTGGCCAACTCTCCGACGCCGTCGAACGGTTGGAGCGCGCG
GGCCGCCGGGTAGGCATTTCCGTGCGCCGGGATAGGAAGCTCCCGCCCACACAGCCGGCACTCGCGCTCCGGCTAGATGG
TCTGGCGGCAGATCTGGAGAGGCTGGAGGAGGAGGTCGGCGAGGCCGTGAAGTCGTTGTCGGCTTCTTTGGCGCGGGCTG
CGGTGGAGCTGGTCCTCGCGAGTCATCAAGCTCGCGACCCCGACTTCCTCCTGTGGCGTGCGCTTGAGGACTTCCCCCCG
GGAACCGAACAGAGGGCTCGGGAGCAAGTTCGGGAGGCGGCTGACGCGATCGTCTCCAGTTTCGAGGGGTCAGCCCCTCA
GTTCAATCTCACGCTTGCCTCAGACGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis