Browse Element(s) Details


Os.23151.1.S1_at

Description gb:AK110682.1
DB_XREF= gi:32995891
TID=Os.23151.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative isoflavone reductase (OSJNBa0086P08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-H05, full insert sequence.
FL= gb:AK110682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1361011/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13590OsAffx.10815.1.S1_at7/111+7599631..7600150Isoflavone reductase homolog IRL, putative
LOC_Os01g13600OsAffx.10815.1.S1_at4/111+7602164..7603347NmrA-like family protein, expressed
LOC_Os01g13610Os.23151.1.S1_at11/111+7615884..7621338NmrA-like family protein, expressed
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23151.1.S1_at--1093--4091Chr01:7616806..7616830 (25 bp)
CGAACAAGATCCTGTACGTGCGGCC
LOC_Os01g13610
Os.23151.1.S1_at--1141--7631Chr01:7616740..7616764 (25 bp)
GGGAGAAGAAGTCCGGCAACACCCT
LOC_Os01g13610
Os.23151.1.S1_at--30--5071Chr01:7616693..7616715 (23 bp)
GCAGCTTGCCAACCAAGTCCAAGAG
LOC_Os01g13610
Os.23151.1.S1_at--609--5451Chr01:7616291..7616315 (25 bp)
GAACTTTCAGCTGGCGATGGTGCAC
LOC_Os01g13610
Os.23151.1.S1_at--346--7471Chr01:7616248..7616272 (25 bp)
GTGTGCGAGCAGACGATCAACCCGG
LOC_Os01g13610
Os.23151.1.S1_at--1147--7011Chr01:7616123..7616147 (25 bp)
GTACAGTACGTACCATGCATGTGCA
LOC_Os01g13610
Os.23151.1.S1_at--877--1231Chr01:7616082..7616106 (25 bp)
AGTTGCGCTATATGTGCCATCGCCA
LOC_Os01g13610
Os.23151.1.S1_at--834--331Chr01:7616033..7616057 (25 bp)
ATACACGTACCAGCATGCAGGGTTT
LOC_Os01g13610
Os.23151.1.S1_at--809--7651Chr01:7616018..7616042 (25 bp)
TGCAGGGTTTACTCGTACGTACCAT
LOC_Os01g13610
Os.23151.1.S1_at--118--4971Chr01:7615969..7615993 (25 bp)
GCATAATGCGCATGGGTGGCACGTC
LOC_Os01g13610
Os.23151.1.S1_at--73--5111Chr01:7615951..7615975 (25 bp)
GCACGTCGCATCAGCCTTAATTAAA
LOC_Os01g13610
Target Sequence 
CGAACAAGATCCTGTACGTGCGGCCGCCGGCGAACAAGCTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGAGAAGAAGTCC
GGCAACACCCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGAGGCACCGTTCCCGGTGAACTT
TCAGCTGGCGATGGTGCACTCGACGCTGGTGGCCGGGGTGTGCGAGCAGACGATCAACCCGGACGTCGGAGCGGAGGCGA
CGGAGCTGTACCCGGAGATGGACTTCCTCACCGTCGACAGCTACCTCGACGCCCTCCTCTTGCATGCATGAAGAACTACG
TAGTACAGTACGTACCATGCATGTGCAGGGTGTTGGTGTTTTTAGTTGCGCTATATGTGCCATCGCCATCATCACCAGCT
AATATATGTATAATACACGTACCAGCATGCAGGGTTTACTCGTACGTACCATAGCAATNTTGTATGTACTACGTACGCAT
AATGCGCATGGGTGGCACGTCGCATCAGCCTTAATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis