Browse Element(s) Details


OsAffx.11036.1.S1_at

Description tigr:9629.m01339
TID=OsAffx.11036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1364011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13610Os.23151.1.S1_at11/111+7615884..7621338NmrA-like family protein, expressed
LOC_Os01g13620OsAffx.21171.3.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.20729.1.S1_x_at2/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13620OsAffx.21171.4.S1_x_at1/111+7632450..7637717retrotransposon protein, putative, unclassified
LOC_Os01g13630OsAffx.22063.1.S1_at11/111+7638319..7639926retrotransposon protein, putative, unclassified
LOC_Os01g13640OsAffx.11036.1.S1_at11/111+7645459..7646806hypothetical protein
LOC_Os01g13650NANA1+7647465..7648877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13660Os.36566.3.S1_x_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_s_at11/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.1.S1_at10/111+7649769..7653390expressed protein
LOC_Os01g13660Os.36566.2.S1_at8/111+7649769..7653390expressed protein
LOC_Os01g13670OsAffx.1250.1.S1_at4/111+7654520..7654864hypothetical protein
LOC_Os01g13670OsAffx.1250.1.S1_x_at3/111+7654520..7654864hypothetical protein
LOC_Os01g13670Os.55250.1.S1_at1/111+7654520..7654864hypothetical protein
LOC_Os01g13680Os.36749.2.A1_at4/111+7657848..7658087hypothetical protein
LOC_Os01g13690Os.1224.1.S1_at11/111+7662078..7664959expressed protein
LOC_Os01g13700Os.16332.1.S1_at11/111+7666873..7669559DNA-binding protein, putative, expressed
LOC_Os01g13710Os.43357.1.S1_at11/111+7669785..7673205transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11036.1.S1_at--548--4091Chr01:7645532..7645556 (25 bp)
CGACGCGATCCCACGGGCAGGTGAC
LOC_Os01g13640
OsAffx.11036.1.S1_at--275--7771Chr01:7645551..7645575 (25 bp)
GGTGACCCGTCGTCGTGGTCCCAAT
LOC_Os01g13640
OsAffx.11036.1.S1_at--179--7231Chr01:7645565..7645589 (25 bp)
GTGGTCCCAATTGCCGGCTACGAGC
LOC_Os01g13640
OsAffx.11036.1.S1_at--1082--3151Chr01:7645573..7645597 (25 bp)
AATTGCCGGCTACGAGCAGCTAGAG
LOC_Os01g13640
OsAffx.11036.1.S1_at--1073--3711Chr01:7645582..7645606 (25 bp)
CTACGAGCAGCTAGAGGCGGCAAAT
LOC_Os01g13640
OsAffx.11036.1.S1_at--324--2271Chr01:7645603..7645627 (25 bp)
AAATGCAGTGGCGGCCTTAGGTTCG
LOC_Os01g13640
OsAffx.11036.1.S1_at--92--6254Chr10:2737330..2737350 (21 bp)
GATGGATTTTATAGGCTCGGGAAGC
NONE
OsAffx.11036.1.S1_at--934--6111Chr01:7646666..7646690 (25 bp)
GAGTGGGCGGCATGGCAGGTCAACC
LOC_Os01g13640
OsAffx.11036.1.S1_at--781--7711Chr01:7646718..7646742 (25 bp)
GGTGGGCCCTACTTGTTGGCGACTC
LOC_Os01g13640
OsAffx.11036.1.S1_at--69--9891Chr01:7646727..7646751 (25 bp)
TACTTGTTGGCGACTCTTGGAAGGG
LOC_Os01g13640
OsAffx.11036.1.S1_at--1044--8011Chr01:7646751..7646775 (25 bp)
GGAGGGACGCATTGTGTACTTGGAA
LOC_Os01g13640
Target Sequence 
CGACGCGATCCCACGGGCAGGTGACCCGTCGTCGTGGTCCCAATTGCCGGCTACGAGCAGCTAGAGGCGGCAAATGCAGT
GGCGGCCTTAGGTTCGTGGTGGCGACAGGGTTTCAAAGAGATGGGGAGCGGCGTGAGCAGCACGAGAGAGGACACGGGGA
GCTCAAGCAACTTAGGAAAATGAGAGAGGGAGGTGCGGGGATGGATTTTATAGGCTCGGGAAGCGGTGAGGAGCTCGGGT
CGAGGCGGCAACGGCCGGTGGAGTGGAGGCGGCATCGTGAGGATAGGGGAGTTGCGGCGCCGATTTCCGCGGAGGGAGTG
TGGGAGGAGAGTGAGGACGTGGGGCGACGCGGTCCCATGGGCGGGGGCGAGAGCACGGGGCAGAGGAGGTGGACGAGCGG
TGCGGAATCGGTAGCGGAGTGGGCGGCATGGCAGGTCAACCGGCTGGAGGTTGAAGGAGAGCCTGACAGGTGGGCCCTAC
TTGTTGGCGACTCTTGGAAGGGGAGGGACGCATTGTGTACTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis