Browse Element(s) Details


Os.55250.1.S1_at

Description gb:AK107737.1
DB_XREF= gi:32992946
TID=Os.55250.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-G04, full insert sequence.
FL= gb:AK107737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3200011/11expressed protein
LOC_Os01g136701/11hypothetical protein
LOC_Os06g147701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31970Os.7150.1.S1_at8/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31970Os.48047.1.S1_at1/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31980OsAffx.17979.1.S1_at10/119+19082298..19084139C1-like domain containing protein
LOC_Os09g31990OsAffx.6464.1.S1_at11/119+19088295..19088984expressed protein
LOC_Os09g32000Os.55250.1.S1_at11/119+19092911..19093754expressed protein
LOC_Os09g32000OsAffx.1250.1.S1_x_at1/119+19092911..19093754expressed protein
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55250.1.S1_at--476--9931Chr09:19093471..19093495 (25 bp)
TACGGCGGATACGACTCCCAGAAAA
LOC_Os09g32000
Os.55250.1.S1_at--529--9271Chr09:19093486..19093510 (25 bp)
TCCCAGAAAACGGTGCGCGGTGATC
LOC_Os09g32000
Os.55250.1.S1_at--394--8031Chr09:19093528..19093552 (25 bp)
GGAGGTGGTAGCATTGCTCGCCAAC
LOC_Os09g32000
Os.55250.1.S1_at--689--4791Chr09:19093543..19093567 (25 bp)
GCTCGCCAACGCACAGGATTGCAGA
LOC_Os09g32000
Os.55250.1.S1_at--833--7911Chr09:19093558..19093582 (25 bp)
GGATTGCAGAGGTTGAGCGCCATCT
LOC_Os09g32000
Os.55250.1.S1_at--771--1653Chr09:19093573..19093597 (25 bp)
AGCGCCATCTCGGAAGGCGATGAGT
LOC_Os09g32000
Os.55250.1.S1_at--788--8373Chr09:19093588..19093612 (25 bp)
GGCGATGAGTGATCCAACTTGTTAA
LOC_Os09g32000
Os.55250.1.S1_at--266--3231Chr09:19093662..19093686 (25 bp)
CAAGTTGTTAATTAGGTGCTCCCAC
LOC_Os09g32000
Os.55250.1.S1_at--912--7771Chr09:19093676..19093700 (25 bp)
GGTGCTCCCACATTTGTAGATATAG
LOC_Os09g32000
Os.55250.1.S1_at--27--231Chr09:19093695..19093719 (25 bp)
ATATAGGAGTCCGTACTTGTACAGT
LOC_Os09g32000
Os.55250.1.S1_at--875--5211Chr09:19093729..19093753 (25 bp)
GAATTTTGATACTGATTCTTTGCAG
LOC_Os09g32000
Target Sequence 
TACGGCGGATACGACTCCCAGAAAACGGTGCGCGGTGATCGGACGGCGAGGATCAACGGAGGTGGTAGCATTGCTCGCCA
ACGCACAGGATTGCAGAGGTTGAGCGCCATCTCGGAAGGCGATGAGTGATCCAACTTGTTAAATTGCTATATACAAGTTT
GATCAAGGATTAGTTGTTAATTATAGTTCATCAAGTTGTTAATTAGGTGCTCCCACATTTGTAGATATAGGAGTCCGTAC
TTGTACAGTATGTTCAGGGAATTTTGATACTGATTCTTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis