Browse Element(s) Details


OsAffx.6464.1.S1_at

Description tigr:9637.m02798
TID=OsAffx.6464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3199011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31970Os.7150.1.S1_at8/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31970Os.48047.1.S1_at1/119+19073649..190783583-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os09g31980OsAffx.17979.1.S1_at10/119+19082298..19084139C1-like domain containing protein
LOC_Os09g31990OsAffx.6464.1.S1_at11/119+19088295..19088984expressed protein
LOC_Os09g32000Os.55250.1.S1_at11/119+19092911..19093754expressed protein
LOC_Os09g32000OsAffx.1250.1.S1_x_at1/119+19092911..19093754expressed protein
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6464.1.S1_at--809--1631Chr09:19088733..19088757 (25 bp)
AGCGAGTGATCCGTCCATCCATTAA
LOC_Os09g31990
OsAffx.6464.1.S1_at--977--7391Chr09:19088738..19088762 (25 bp)
GTGATCCGTCCATCCATTAATTCGA
LOC_Os09g31990
OsAffx.6464.1.S1_at--422--7271Chr09:19088745..19088769 (25 bp)
GTCCATCCATTAATTCGACGATCTC
LOC_Os09g31990
OsAffx.6464.1.S1_at--1036--3151Chr09:19088756..19088780 (25 bp)
AATTCGACGATCTCAGCATAGCTGT
LOC_Os09g31990
OsAffx.6464.1.S1_at--762--5771Chr09:19088761..19088785 (25 bp)
GACGATCTCAGCATAGCTGTGATTA
LOC_Os09g31990
OsAffx.6464.1.S1_at--530--4731Chr09:19088776..19088800 (25 bp)
GCTGTGATTAGCTTTTGATCACACG
LOC_Os09g31990
OsAffx.6464.1.S1_at--904--8831Chr09:19088791..19088815 (25 bp)
TGATCACACGAGTTATTGTGGATTT
LOC_Os09g31990
OsAffx.6464.1.S1_at--363--10051Chr09:19088827..19088851 (25 bp)
TAGTTGATTTTTAGTCGTTCATCCC
LOC_Os09g31990
OsAffx.6464.1.S1_at--860--9391Chr09:19088841..19088865 (25 bp)
TCGTTCATCCCCCATTTGAGGAGGA
LOC_Os09g31990
OsAffx.6464.1.S1_at--170--10271Chr09:19088855..19088879 (25 bp)
TTTGAGGAGGAGGTAGCCATGTACA
LOC_Os09g31990
OsAffx.6464.1.S1_at--605--8771Chr09:19088930..19088954 (25 bp)
TGTATATTTAATTGCGATGTTCCGA
LOC_Os09g31990
Target Sequence 
AGCGAGTGATCCGTCCATCCATTAATTCGACGATCTCAGCATAGCTGTGATTAGCTTTTGATCACACGAGTTATTGTGGA
TTTGTGGTTTAGTTTAGTTGATTTTTAGTCGTTCATCCCCCATTTGAGGAGGAGGTAGCCATGTACAGTAAGTAAGAACG
TACAAAAAAACAAAGCACATTTTGAACTTTTTTTTCATGTATATTTAATTGCGATGTTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis